Query= MSMg01no479_g20.b1 MSMg01no479_g20.b1 CHROMAT_FILE:
MSMg01no479_g20.b1 PHD_FILE: MSMg01no479_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:25 2005
(629 letters)
>mm_chr3_117012041_117013069
Length = 1029
Score = 1131 bits (585), Expect = 0.0
Identities = 621/647 (95%), Gaps = 23/647 (3%)
Strand = Plus / Plus
Query: 4 ggaattcaccccattacgcttcaaaggttggcaaagagtggagaaatgctggcccaagac 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggaattcaccccaaaaggcttcaaaggttggcaaagagtggagaaatgctggcccaagac 244
Query: 64 ttctacatcaagtcccagggacagtttcttgctgttgctgctaggctcggtgggcacttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttctacatcaagtcccagggacagtttcttgctgttgctgctaggctcggtgggcacttc 304
Query: 124 actctgttgcatgtccttcctttccacttcccctttctcatctactgaaacatctactgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 actctgttgcatgtccttcctttccacttcccctttctcatctactgaaacatctactgg 364
Query: 184 ttcacccactacctgcgcctcagtttgagtcttctcctttagtgtatgagccaccacttc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttcacccactacctgcgcctcagtttgagtcttctcctttagtgtatgagccaccacttc 424
Query: 244 tgcagttggggttgaagggggttcaagaggaatcttctctcttcattcatatcaaggcag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgcagttggggttgaagggggttcaagaggaatcttctctcttcattcatatcaaggcag 484
Query: 304 agtgggaaaacccgttcatctctctcccaaggtgggggcttactagatatgctgctcttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agtgggaaaacccgttcatctctctcccaaggtgggggcttactagatatgctgctcttc 544
Query: 364 ttcctccactatctggagataacagcagccattcaacaatactcaagttcaccccttttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 545 ttcctccactatctggagataacagcagccattcaacaatactcaagttcacc--ttttt 602
Query: 424 ttttttttt---------------------agagcatagcgatttgccgcaatatggctg 462
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 603 ttttttttttttttttttttttttttttttagagcatagcgatttgccgcaatatggctg 662
Query: 463 ccactgtgctgtcctctggctcctggactgctaacactgttcacactcctgtaactcatc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ccactgtgctgtcctctggctcctggactgctaacactgttcacactcctgtaactcatc 722
Query: 523 tcttcagttaaatcttgcatagatatcattcatatcctgatgacaccctgactgaatgca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tcttcagttaaatcttgcatagatatcattcatatcctgatgacaccctgactgaatgca 782
Query: 583 cctgttccaccaaacacctttaaaatctattggttttttattttagg 629
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 cctgttccaccaaacacctttaaaatctattggttttttattttagg 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_g20.g1 MSMg01no479_g20.g1 CHROMAT_FILE:
MSMg01no479_g20.g1 PHD_FILE: MSMg01no479_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:25 2005
(655 letters)
>mm_chr3_117210209_117211263
Length = 1055
Score = 1251 bits (647), Expect = 0.0
Identities = 653/655 (99%)
Strand = Plus / Minus
Query: 1 agcacatcatccttcagattataaataccaagtagtgtcaagaatcttccagctcctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 agcacatcatccttcagattataaataccaagtagtgtcaagaatcttccagctcctgag 796
Query: 61 ttcctaggggcaactactctgtcacttagctgttttgtcctgaaacaagtgctttagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttcctaggggcaactactctgtcacttagctgttttgtcctgaaacaagtgctttagcct 736
Query: 121 ccacaaatatctgttgcctcaggagtcactgaatcaagaaagcggttctgtgtgcactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ccacaaatatctgttgcctcaggagtcactgaatcaagaaagcggttctgtgtgcactga 676
Query: 181 catgatgttcagactgtacaaaggaagtctggtagaatcaaacacctcatgggatgttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 catgatgttcagactgtacaaaggaagtctggtagaatcaaacacctcatgggatgttga 616
Query: 241 gactgaatcgtgtctaaattacaaacaatttacttgaaactcggtgggtttttgaaactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gactgaatcgtgtctaaattacaaacaatttacttgaaactcggtgggtttttgaaactg 556
Query: 301 aaatcagccacctaaggattggtccagaagcatcaaggtgactgtcaaatgatgcaagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaatcagccacctaaggattggtccagaagcatcaaggtgactgtcaaatgatgcaagtg 496
Query: 361 tacagtgatgctaaagggagagaattactttcccacccacaaatagcttcagctcacagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tacagtgatgctaaagggagagaattactttcccacccacaaatagcttcagctcacagt 436
Query: 421 ctttctcccaaaccactctcctgtaaggtaacgaggaacccgattctttacacggtgtgc 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 435 ctttctcccaaaccactctcctgtaaggtaatgaggaacccgattctttacacggtgtgc 376
Query: 481 ggtcatctgctctgaaagtgcattacagacagggtggtctagttcagaaatccaaatatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggtcatctgctctgaaagtgcattacagacagggtggtctagttcagaaatccaaatatg 316
Query: 541 atgcaaattagaaatgtttgtatagaaaatatgaaaggaaatgatactttatatagtttc 600
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atgcaaactagaaatgtttgtatagaaaatatgaaaggaaatgatactttatatagtttc 256
Query: 601 tataaactttgagagatccaagtgttaaatgcaccgaggttgtgtgtatgtgtgt 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tataaactttgagagatccaagtgttaaatgcaccgaggttgtgtgtatgtgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
