TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCAATATCTTCCTCTTATTTAAAATAAGAGGTCTAATTTAAAAGTT
AAGTTTCCCCAGTAGGGAAAAGATTGAGAAAATTCAGAATATTCTGAATA
ATGAAAATCTTTGACAGGATCTCCATGGCAACCACTGAGAAATAACAAAA
ATTTAGGAGATCATAAGAGCCATATCTAATGTTCACTTTTCTGGTTATAA
GATCTAAGTTAAGTATTGTTAGAAGGGAGAAAACCATAGTGAGGAGATGA
AGGATAAGAAAACGCTACTTTATGCTTAGAAAACATCAGGTAAGTGGAAT
TAGTCATTCATTCATTCATTTAATAAGATATATCTAGTATCCAGTGAGGG
TTGGCTATGTGATAATTGTGAGAAAGAAAATACTATGAATGATAATTATT
GATTATCTCCTTCTCAAGTCTTAGAATATGAATAAGAAAGTTCAATATTA
AAATTCACTGTTTTGCTAAGATCTACATAACAGAATACTACAGTGAAATA
ATTGGCCCTGGTTAGGAGAATACTGAAAAAACAATGGACAAAGCAGTATT
TCCATGGTATATAAAGACTAAGTAATGATTTGCTAGATATAAGAGGAGAT
AGAAGAGACACACCACTGATCACACAATGATCATACACAGCAGTACACAG
GACTTATTTTGACAAAGTGGGGAAGAAGGGAAGCCAGAATCTGATGGGGA
GAGAAGGGGATAGCTGAAGCNNTAATTACNCAGAGGATGAN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACATTGGTTCTCTGACCTGTGGAGGG
AGGGCTATTTTGGTTGGAAAGACTAAATTGAAGCCTTTAGAGTTACTTCT
GCCAAGGTAAATAATAAATCAAACACAAAATCACATCCCTAAAGAAACTG
CAAAAATTGTGCCACCATCAAGCACTTAAAAGATTCAGGGTGGTGGTTCT
CATGATATCTCTTTTTAGCTCTATTTGGGGAGCACAGAAGACAATTGGCT
TGTGGAGAATGACATTTTTCTATAGAAAATTCATCAGTTAGTAACTTCAT
TGCAGCTGCTATACCAGACGAGATGTCCTTACTTGAGAAGACTAACACAT
CTTTTAGTATGTGATAGGCAGCTATTGATCTAGCAAATGCCTTTTTTTTC
CTCAGAAGCTGTCCATAAGGTTTACCATAAGCAATTTGCTTTCAGTGCTT
TCAGTTTGCTTTCCAACGGTGTACCTTTACTGTTTTATCTCAAGGATAAC
TCTCCCACCCTGTGTTGTAACTTAGATTGTCTCTTCCAAAACATATCATA
TTGATGACATTATGCCGATTCAGAAAATCATTTACTTTTGACTCATTGGT
AACACATATGTGTATTAAAGGTTGGGGAAATAAACCCAACAGAAATTCAA
GGGCCTTCCACCTAAGTGGTATAGGGCCTGCCAAGATATTTCTTCCTATG
TTGAAAGATAGTTATTTCTACC

Query= MSMg01no479_j18.b1 MSMg01no479_j18.b1 CHROMAT_FILE:
MSMg01no479_j18.b1 PHD_FILE: MSMg01no479_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:40 2005
         (671 letters)



>mm_chr3_49585121_49586191
          Length = 1071

 Score = 1274 bits (659), Expect = 0.0
 Identities = 665/667 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcaatatcttcctcttatttaaaataagaggtctaatttaaaagttaagtttc 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gaattcctcaagatattcctcttatttaaaataagaggtctaatttaaaagttaagtttc 812

                                                                       
Query: 65  cccagtagggaaaagattgagaaaattcagaatattctgaataatgaaaatctttgacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cccagtagggaaaagattgagaaaattcagaatattctgaataatgaaaatctttgacag 752

                                                                       
Query: 125 gatctccatggcaaccactgagaaataacaaaaatttaggagatcataagagccatatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gatctccatggcaaccactgagaaataacaaaaatttaggagatcataagagccatatct 692

                                                                       
Query: 185 aatgttcacttttctggttataagatctaagttaagtattgttagaagggagaaaaccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aatgttcacttttctggttataagatctaagttaagtattgttagaagggagaaaaccat 632

                                                                       
Query: 245 agtgaggagatgaaggataagaaaacgctactttatgcttagaaaacatcaggtaagtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agtgaggagatgaaggataagaaaacgctactttatgcttagaaaacatcaggtaagtgg 572

                                                                       
Query: 305 aattagtcattcattcattcatttaataagatatatctagtatccagtgagggttggcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aattagtcattcattcattcatttaataagatatatctagtatccagtgagggttggcta 512

                                                                       
Query: 365 tgtgataattgtgagaaagaaaatactatgaatgataattattgattatctccttctcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgtgataattgtgagaaagaaaatactatgaatgataattattgattatctccttctcaa 452

                                                                       
Query: 425 gtcttagaatatgaataagaaagttcaatattaaaattcactgttttgctaagatctaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtcttagaatatgaataagaaagttcaatattaaaattcactgttttgctaagatctaca 392

                                                                       
Query: 485 taacagaatactacagtgaaataattggccctggttaggagaatactgaaaaaacaatgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 taacagaatactacagtgaaataattggccctggttaggagaatactgaaaaaacaatgg 332

                                                                       
Query: 545 acaaagcagtatttccatggtatataaagactaagtaatgatttgctagatataagagga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 acaaagcagtatttccatggtatataaagactaagtaatgatttgctagatataagagga 272

                                                                       
Query: 605 gatagaagagacacaccactgatcacacaatgatcatacacagcagtacacaggacttat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gatagaagagacacaccactgatcacacaatgatcatacacagcagtacacaggacttat 212

                  
Query: 665 tttgaca 671
           |||||||
Sbjct: 211 tttgaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)