Query= MSMg01no479_l13.b1 MSMg01no479_l13.b1 CHROMAT_FILE:
MSMg01no479_l13.b1 PHD_FILE: MSMg01no479_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:49 2005
(646 letters)
>mm_chr3_129102309_129103358
Length = 1050
Score = 1122 bits (580), Expect = 0.0
Identities = 633/657 (96%), Gaps = 13/657 (1%)
Strand = Plus / Plus
Query: 1 tcataacatgatagttataataatacaaaagtacctagatttatagatggtttggatgga 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 196 tcataacatgatagttataataatacaaaagtacctagatttattgatggttgggatgga 255
Query: 61 tagataaggaagaactcatgacttcatattcttggttagtagacaacaaagattggggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tagataaggaagaactcatgacttcatattcttggttagtagacaacaaagattggggcc 315
Query: 121 aattctttttttttt----aagattttattattttatgtatataagag---aatgtagct 173
||||||||||||||| |||||||||||||||||||||||| ||| |||||||||
Sbjct: 316 aattctttttttttttttaaagattttattattttatgtatat--gagtacaatgtagct 373
Query: 174 gttttcaaatgcacgagaagagggcatcagatcccattacagatggttgtgagccaccat 233
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gttttcagatgcacgagaagagggcatcagatcccattacagatggttgtgagccaccat 433
Query: 234 gtggttgcngtgatttgaactcaggacctcaggaagagcaatcagtgctcttaaccactg 293
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtggttgctgggaattgaactcaggacctcaggaagagcaatcagtgctcttaaccactg 493
Query: 294 agccatttctccagccctggggccaactctttatgttttttcccccctaag----aaaaa 349
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct: 494 agccatttctccagccctggggccaactctttatgttttttctccagtaaggaaaaaaaa 553
Query: 350 aaaaaagcagattttataattaatgcaagtgtattcaacagctaaattaaaataaaagga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaaaaagcagattttataattaatgcaagtgtattcaacagctaaattaaaataaaagga 613
Query: 410 ctgttgtgtgatggaacttatcctggggcgatgcaacacacacatctgctcctcccaccc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctgttgtgtgatggaacttatcctggggcgatgcaacacacacatctgctcctcccaccc 673
Query: 470 agggtacccacaacagacaaaaagtgcagattctacagcctccattcactgtgaggagac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agggtacccacaacagacaaaaagtgcagattctacagcctccattcactgtgaggagac 733
Query: 530 accatgaccaaggcagctgttataaaggaaaacattttattggggctggcttacagattt 589
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 734 accatgaccaaggcagctgttataaaggaaaacattttattggggatggcttacagattt 793
Query: 590 ggaggttcagtccgttatcatcagggcaggaattatggacctggagaaggagctgag 646
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 794 ggaggttcagtccgttatcatcagagcaggaattatggacctggagaaggagctgag 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1050
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1040
Effective search space: 661440
Effective search space used: 661440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_l13.g1 MSMg01no479_l13.g1 CHROMAT_FILE:
MSMg01no479_l13.g1 PHD_FILE: MSMg01no479_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:49 2005
(544 letters)
>mm_chr3_129222924_129223867
Length = 944
Score = 862 bits (446), Expect = 0.0
Identities = 488/502 (97%), Gaps = 1/502 (0%)
Strand = Plus / Minus
Query: 43 gtcccttgtacctgtgcagagtgacagggcgatgggaatgagtggtggggaggcttcttc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 944 gtcccttgtacctgtgcagagtgacagggcgatgggaatgagtggtggggaggcttc-tc 886
Query: 103 acgccacagaggataagaagaaagggagatgggcagtggggacacatgcctttaatccca 162
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 885 acgccacagaggataagaagaaagggaggtgggcagtgggggcacatgcctttaatccca 826
Query: 163 gtagttaggaggcagaggcaagtggatgtctgtgagttcaaggccagcctgagctaccaa 222
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 825 gtagttaggaggcagaggcaaatggatgtctgtgagttcaaggccagcctgaactaccaa 766
Query: 223 agtaaattccagagtatgtttttggtcaactgtttgtatcagttggtacccatctcctaa 282
|||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 765 agtaaattcccgagtatgcccttggtgaactgtttgtatcagttggtacccatctcctaa 706
Query: 283 cttcccacaagagcaccacctgctgggggctgaaccccaatactcttcaaatccctgaca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cttcccacaagagcaccacctgctgggggctgaaccccaatactcttcaaatccctgaca 646
Query: 343 gcacatatcaataagcttccttagatgtttcgtggaaataagagtgtaaatgtgtaaaac 402
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gcacatatcaataagctcccttagatgtttcgtggaaataagagtgtaaatgtgtaaaac 586
Query: 403 tatactcacatgtcacaataggtaccataaaggttactcaaaagttatgaattcaacggt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tatactcacatgtcacaataggtaccataaaggttactcaaaagttatgaattcaacggt 526
Query: 463 tgaagtctggaattggatgtgggggcctggagaaatggctcaacagggaagagcacttgt 522
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 525 tgaagtctggaattgaatgtgggggcctggagaaatggctcaacagggaagagaacttgc 466
Query: 523 ttagaaagcatctgaacctaag 544
||||||||||||||||||||||
Sbjct: 465 ttagaaagcatctgaacctaag 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
