BAC Information

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BAC

Clone NameMSMg01-479N18
Chromosome3 (Build37)
Map Location 155,219,332 - 155,219,726
singlet/doubletsinglet
Overlap genenone
Upstream geneTyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1
Downstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479N18.T7 (MSMg01no479_n18.b1)MSMg01-479N18.TJ (MSMg01no479_n18.g1)
ACCAG560638AG560639
length790777
length of high quality
(start - end)
625 (45 - 669)664 (72 - 735)
definitionCHROMAT_FILE: MSMg01no479_n18.b1 PHD_FILE: MSMg01no479_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:00 2005CHROMAT_FILE: MSMg01no479_n18.g1 PHD_FILE: MSMg01no479_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTTCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGTATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTGT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATGGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTA
TCCTTGAGAAGACTTTTTGCTATCCTAAGTTTTTTGTTATTCCAGACAAT
TTGCAATTGCTCCTTTCTCATTCGTGAGATTGAGTTGGAT
AATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTATATTCTTATACCCCTAGAGTTATAAG
AAATTTCTGACTTTGTAATCTTAAGATTAGAAGGAACAGGTGTCACATAA
TTCAATTATGCATGTCACATAACTGTTCTCTGCTACTGTAATAAATCATC
ATGATAGTTTGTATGGAAATAAACAGCCTATATCCTCAAACCATAAAATG
AGAATGCTTAGGATTGCCAAGACCAGTTGTCAGTATATTCCCCAGAAGGA
CAGAGGGTAGAGTATTATATACAGAGACAGAAAATAGTGCAGCTTGGAGA
ATAAGAAGGGAACAAGAAAGAGGAGAAAAGGGATATTTCTTCTGGAGGAA
ATCAAGGCAAAAGATAGAGAGGAGACAAACACAGGAAAATGGCAGTTTTT
AAAGATAGAAGGAGAAACACAATGCTAGAATGAGATGTTTAATTTTAATT
GGGCATGGTTTTTAGGTGAGCCGATGAGGTCTTTGGATTGCTGGACTTTA
ATACTTTGGTAGCTAGAACTTGGTAGTCAGCCTCAGGAGGATGAAGTGGC
CAAATAAGGGAATAGTCCTTGATGTGCAGATTAAGGAATGCAATCTAATG
GTTTCTAGTGAGTCAACAGAATGAGGGAAAAGAACAAGGTCTGCCAGAGC
CACACTTGTCAGGCTGGGCTGGCTATAATCCCTCCAGACACACATACTGC
TATCACTGGCTACAGCCACCTGTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_n18.g1 MSMg01no479_n18.g1 CHROMAT_FILE:
MSMg01no479_n18.g1 PHD_FILE: MSMg01no479_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:00 2005
         (664 letters)



>mm_chr3_155219332_155220395
          Length = 1064

 Score =  710 bits (367), Expect = 0.0
 Identities = 388/395 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatattcttatacccctagagttataagaaatttctgactttgtaatcttaagattaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctatattcttatacccctagagttataagaaatttctgactttgtaatcttaagattaga 336

                                                                       
Query: 61  aggaacaggtgtcacataattcaattatgcatgtcacataactgttctctgctactgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aggaacaggtgtcacataattcaattatgcatgtcacataactgttctctgctactgtaa 276

                                                                       
Query: 121 taaatcatcatgatagtttgtatggaaataaacagcctatatcctcaaaccataaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 275 taaatcatcatgatagtttgtatggaaataaacagcctatatcctcaaaccataaaagga 216

                                                                       
Query: 181 gaatgcttaggattgccaagaccagttgtcagtatattccccagaaggacagagggtaga 240
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 215 gaatgctcaggattgccaagaccagttgtcagtatattccccagaaggacagagagtaga 156

                                                                       
Query: 241 gtattatatacagagacagaaaatagtgcagcttggagaataagaagggaacaagaaaga 300
           |||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gtataagagacagagacagaaaatagtgcagcttggagaataagaagggaacaagaaaga 96

                                                                       
Query: 301 ggagaaaagggatatttcttctggaggaaatcaaggcaaaagatagagaggagacaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ggagaaaagggatatttcttctggaggaaatcaaggcaaaagatagagaggagacaaaca 36

                                              
Query: 361 caggaaaatggcagtttttaaagatagaaggagaa 395
           ||||||||||||||||||||||| |||||||||||
Sbjct: 35  caggaaaatggcagtttttaaagttagaaggagaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)