Query= MSMg01no479_o01.b1 MSMg01no479_o01.b1 CHROMAT_FILE:
MSMg01no479_o01.b1 PHD_FILE: MSMg01no479_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:01 2005
(706 letters)
>mm_chr3_71230378_71231482
Length = 1105
Score = 1241 bits (642), Expect = 0.0
Identities = 682/696 (97%), Gaps = 5/696 (0%)
Strand = Plus / Minus
Query: 5 gaattcgtgtgattcc-tcttctggaccaggggtagcttctcagaattccctccctcagt 63
||||| ||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 1087 gaatttgtgtg-gtccatcttctggagcagtggtagcttctcagaattccctccctcagt 1029
Query: 64 agatatgactgacaatagtgcctcagctcgggatgtggcttccagaatcctggttattac 123
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1028 agatatgactgacaatagtgcctcagctcgagatgtggcttccagaatcctggttattac 969
Query: 124 ccatgctgggatcagagttgtcttctccttgcatgtatcacttgcatataatcacacctg 183
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 968 ccatgctgggatcagagttgtcttctccttg--tgtatcacttgtatataatcacacctg 911
Query: 184 atttgagttcatatgggaaaaattatttgtcctacctccacatgtttgtgattagtaatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 atttgagttcatatgggaaaaattatttgtcctacctccacatgtttgtgattagtaatt 851
Query: 244 gactgttccaatcaactataagtagtgagacagctattgtcaaactgagaagtgacagct 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 850 gactgttccaatcaactataagtagtgagactgctattgtcaaactgagaagtgacagct 791
Query: 304 gagccagaaatgtcttgcaccacttgtaaactgcacttcagctccctgaattatgaaatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gagccagaaatgtcttgcaccacttgtaaactgcacttcagctccctgaattatgaaatg 731
Query: 364 aaaaattgttcaatttacctggacagtgccgatttgcttctatggctcttggaaatcaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aaaaattgttcaatttacctggacagtgccgatttgcttctatggctcttggaaatcaga 671
Query: 424 gcaatacattggaaatgttcatgtttttaaaaacatcctagaaatattgtatttatttga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gcaatacattggaaatgttcatgtttttaaaaacatcctagaaatattgtatttatttga 611
Query: 484 aaacagttatacctgaataatttcttcttgttttcacaatggccaaattctcttcacact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaacagttatacctgaataatttcttcttgttttcacaatggccaaattctcttcacact 551
Query: 544 ccatagttatacaaacagacttataacaaagttctctgaaattacttaggtttataggag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ccatagttatacaaacagacttataacaaagttctctgaaattacttaggtttataggag 491
Query: 604 aaatattaacaaatattcattaaggtagtttgttttaattcaaaaattagctagtagttt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaatattaacaaatattcattaaggtagtttgttttaattcaaaaattagctagtagttt 431
Query: 664 tgacatccaaaatactctgtaatttttttttttttt 699
|||||||| |||| ||||||| ||||||||||||||
Sbjct: 430 tgacatccgaaatgctctgta-tttttttttttttt 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1105
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1095
Effective search space: 762120
Effective search space used: 762120
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no479_o01.g1 MSMg01no479_o01.g1 CHROMAT_FILE:
MSMg01no479_o01.g1 PHD_FILE: MSMg01no479_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:01 2005
(568 letters)
>mm_chr3_71086189_71087156
Length = 968
Score = 1073 bits (555), Expect = 0.0
Identities = 564/567 (99%)
Strand = Plus / Plus
Query: 1 tctgtggctacttgtgctgaagattattcttaccttttaattctgaaatttggagagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtggctacttgtgctgaagattattcttaccttttaattctgaaatttggagagaaa 260
Query: 61 atgaacctgatgaagacccctagactgtacattttccagaaaactagactgtaccattca 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 atgaacctgatgaagacccctagactgtacattttccagaaatctagactgtaccattca 320
Query: 121 aaactcataggctgtaccatgtcaagatccctaatattttattaatctatatcaccttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactcataggctgtaccatgtcaagatccctaatattttattaatctatatcaccttat 380
Query: 181 gggccatggtaataaatcatgatagctgatttctcagggttcctgtttaacctgcaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggccatggtaataaatcatgatagctgatttctcagggttcctgtttaacctgcaggca 440
Query: 241 ggtccactgaagaatatccctttcctccaataattgcttacctagcatttataatcttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtccactgaagaatatccctttcctccaataattgcttacctagcatttataatcttat 500
Query: 301 ttaaggtagctagaatcttggaattttctcagcttcatgaccctgataaatgttgtatat 360
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 ttaaggtagctagaatcctggaattttctcagcttcatgaccctgataaatgttgtattt 560
Query: 361 tttttccttaatcttgcatgtattattaaaaccttgatgttaaatggtttttaaatttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttccttaatcttgcatgtattattaaaaccttgatgttaaatggtttttaaatttta 620
Query: 421 aaacaatacatttttaatggaaatataattatagcactctcccctgtccctttgctccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaatacatttttaatggaaatataattatagcactctcccctgtccctttgctccct 680
Query: 481 ctaggccttcccaggtatactctctaaccctcaaatcctcccatgataactaccaatctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaggccttcccaggtatactctctaaccctcaaatcctcccatgataactaccaatctc 740
Query: 541 aagttgaaagcctcttttttccttgtt 567
|||||||||||||||||||||||||||
Sbjct: 741 aagttgaaagcctcttttttccttgtt 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
