Query= MSMg01no480_f19.b1 MSMg01no480_f19.b1 CHROMAT_FILE:
MSMg01no480_f19.b1 PHD_FILE: MSMg01no480_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:38 2005
(386 letters)
>mm_chr3_44330951_44331735
Length = 785
Score = 735 bits (380), Expect = 0.0
Identities = 383/384 (99%), Gaps = 1/384 (0%)
Strand = Plus / Plus
Query: 3 ataaataaataaataaataaataaaacatatagttgtgaatttaaatatatattaaactt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ataaataaataaataaataaataaaacatatagttgtgaatttaaatatatattaaactt 262
Query: 63 attattgttttaatctctgtttcgattaaaatttgggtcccacaattttaacttctatat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attattgttttaatctctgtttcgattaaaatttgggtcccacaattttaacttctatat 322
Query: 123 ttttatgtataatactaaatgaactaaacaaaatccttagtaaacatttctttttgagag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttttatgtataatactaaatgaactaaacaaaatccttagtaaacatttctttttgagag 382
Query: 183 agtattttgcaccccccccccatctttctctctgtgtgtgtcacataatatagctatgta 242
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agtattttgcaccccccccc-atctttctctctgtgtgtgtcacataatatagctatgta 441
Query: 243 aacttccacaaactgcatagttttgggacaattgaagaatgagaaaaaaatgagagacaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aacttccacaaactgcatagttttgggacaattgaagaatgagaaaaaaatgagagacaa 501
Query: 303 tttatagaaaagctgagatcaaggaggtcatgagttctgatgcaaacgcactacagcctc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tttatagaaaagctgagatcaaggaggtcatgagttctgatgcaaacgcactacagcctc 561
Query: 363 cacatccggtgccctgttatagac 386
||||||||||||||||||||||||
Sbjct: 562 cacatccggtgccctgttatagac 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 785
Length adjustment: 9
Effective length of query: 377
Effective length of database: 776
Effective search space: 292552
Effective search space used: 292552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_f19.g1 MSMg01no480_f19.g1 CHROMAT_FILE:
MSMg01no480_f19.g1 PHD_FILE: MSMg01no480_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:38 2005
(647 letters)
>mm_chr3_44527197_44528244
Length = 1048
Score = 1220 bits (631), Expect = 0.0
Identities = 643/647 (99%), Gaps = 1/647 (0%)
Strand = Plus / Minus
Query: 1 ttattatagaaaaataatgttgtatcatttacaagtccctgtggctgatggaaacacagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ttattatagaaaaataatgttgtatcatttacaagtccctgtggctgatggaaacacagc 788
Query: 61 tcctgatgagtctactttcttttgttaccaccttattactttaaaaatgtatgaaactcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tcctgatgagtctactttcttttgttaccaccttattactttaaaaatgtatgaaactcc 728
Query: 121 aaatgcctctggaatcctcttccacactacatttattgctttaattcagtaaatgtgcct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aaatgcctctggaatcctcttccacactacatttattgctttaattcagtaaatgtgcca 668
Query: 181 ctttaatctgctatctttcttattttattaagtttttatacttgggattctttatgtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctttaatctgctatctttcttattttattaagtttttatacttgggattctttatgtctg 608
Query: 241 ctttctaatacaactatttttctatatcttggtaagactggggttctgtgtccataaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctttctaatacaactatttttctatatcttggtaagactggggttctgtgtccataaaag 548
Query: 301 acatttcttatgaacacacataacttcaaaagacacatctgaatatatctataagta-tt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 547 acatttcttatgaacacacataacttcaaaagacacatctgaatatatctataagtattt 488
Query: 360 tttttcataaattactttgaaccctgtcttataagtagtgaaattgattctctttttatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 487 tttttcataaattactttgaaccctgtcttataagtagtgaaattgattctctttttttc 428
Query: 420 tctatttttaaagaagattttaattgtccattctgaaaatttacaatttagaagatgttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tctatttttaaagaagattttaattgtccattctgaaaatttacaatttagaagatgttt 368
Query: 480 aaattgacccccaagggaatgcttttctctgcaattacccttgtttatcatccctttgat 539
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 367 aaattgacccccaagggaatgctttcctctgcaattacccttgtttatcatccctttgat 308
Query: 540 tttatttaacacactatctgacaacaagaaaagatccatgatcttaatcttgctgatcct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tttatttaacacactatctgacaacaagaaaagatccatgatcttaatcttgctgatcct 248
Query: 600 cctgtaaccattaggcaaatgcctcatttaacaaatgagtcttctgc 646
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cctgtaaccattaggcaaatgcctcatttaacaaatgagtcttctgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1048
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1038
Effective search space: 661206
Effective search space used: 661206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
