Query= MSMg01no480_k12.b1 MSMg01no480_k12.b1 CHROMAT_FILE:
MSMg01no480_k12.b1 PHD_FILE: MSMg01no480_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:02 2005
(322 letters)
>mm_chr3_139161467_139162188
Length = 722
Score = 584 bits (302), Expect = e-171
Identities = 317/322 (98%)
Strand = Plus / Minus
Query: 1 ttcactacaaggaaatgtaatgtgttagatcaagtcaatggataaaggagacaaaatcgt 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 522 ttcactacaaggaaatgtaatgtgttggatcaagtcaatggataaaggagacaaaatcgt 463
Query: 61 ctgcatggttacgtggggagaaaagtcaggttgctacctgcaatttatgttgctttaatc 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 462 ctgcatggttacgtggggagaaaagtcaggttggtacctgcaatttatgttgctttaatc 403
Query: 121 caacatggaagattccatccatgctagagcaagagaggcaagtatcatttccctctgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caacatggaagattccatccatgctagagcaagagaggcaagtatcatttccctctgtgt 343
Query: 181 atcacctgctagacagattgaaaaatatggatgcccgctacattttatgatttaatatta 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 342 atcacctgctagacagattgaaaaatatggatgcccgctacattttacgatttaatatta 283
Query: 241 ctgtcagtgacttcaacccatccattattcaacatcttattacatatttgagtagataat 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 282 ctgtcagtgacttcaacccatccattattcaccatcttattacatatttgagtagatgat 223
Query: 301 tatcttacgagaaatatcaaat 322
||||||||||||||||||||||
Sbjct: 222 tatcttacgagaaatatcaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_k12.g1 MSMg01no480_k12.g1 CHROMAT_FILE:
MSMg01no480_k12.g1 PHD_FILE: MSMg01no480_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:02 2005
(233 letters)
>mm_chr3_139006389_139007023
Length = 635
Score = 333 bits (172), Expect = 7e-96
Identities = 219/236 (92%), Gaps = 8/236 (3%)
Strand = Plus / Plus
Query: 3 ttcctttatgta-atgtatatttagaacacttcttc--t-gtaccctgttccttatggct 58
|||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 203 ttcctttatgtacatgtatatttagaacacttcttcagtagtag--tgttccttatggct 260
Query: 59 ttttgaaaagcctccgcctgttatttatccttccccataatccctcctctatcctg-cct 117
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 261 ttttgaaaagcctccacctgttatttatccttccccataatccctcctctatc-tggcct 319
Query: 118 ctcacctgtgccccttcagtcttcctgttctaatttctcctttatccctttattattttg 177
|||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct: 320 ctcacctgtgcccctttagtcttcctgttctaatttctcctttatccctttataacattg 379
Query: 178 tgttcaatagccccccgtccccatgatcccttactagctaacaaacttttctgaat 233
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 380 tgttcaatagccctccatccccatgatctcttactagctaacaaacttttctgaat 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 635
Length adjustment: 9
Effective length of query: 224
Effective length of database: 626
Effective search space: 140224
Effective search space used: 140224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
