BAC Information

Click to search

BAC

Clone NameMSMg01-480L11
Chromosome3 (Build37)
Map Location 129,825,867 - 129,826,425
singlet/doubletsinglet
Overlap genenone
Upstream genePitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844
Downstream geneEG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480L11.T7 (MSMg01no480_l11.b1)MSMg01-480L11.TJ (MSMg01no480_l11.g1)
ACCAG561291AG561292
length715715
length of high quality
(start - end)
547 (78 - 624)69 (256 - 324)
definitionCHROMAT_FILE: MSMg01no480_l11.b1 PHD_FILE: MSMg01no480_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:06 2005CHROMAT_FILE: MSMg01no480_l11.g1 PHD_FILE: MSMg01no480_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAACTTATATTTGCGGCCGCTATACGAACACAATTTCAGACCGAGGGCGG
AANTCNCCNAGTTTCAAAAACGGCGGAAAAAAAAAAACCCGATTCAATGG
TGGTCTTGAACCAAAATTTTGACACAGTAAGAAGCTTTGTTGTGTATATC
ATAGAAATTTATGGCTAAGCAGAGTTAGAGGTTACTTAGTGTTTCATGGA
ATAGGAACGTTAGATTTATTGAGCTTAAGAAATTTGACTATGGTGGTCAC
TTGAAATCCAAGACTAAATCCCTTGCCATCCCCATTCTCTATGCAGGAAT
CTTCTCTTCTCTTTTTCNATCNAAAACCTACATGATATACTGCTGTTGTC
ATCGTGTGTGGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGCATGGCTGT
ACATGAGGGCAAGAAGTTAAGTCAGATGTCTCCCTCAATCAGTCACCATT
TTATTTTTTGAGATGGAATTTCTCACTGAATTCAGAGCTCATCAATTAGC
TAGGCTGGCTAGCCAGCACACCCCAGGACTCTTCCGGTTGTTGCTTCCTT
AGTGTTGGGATAACAGACATACATCACTGCACTCAGTTATTTAAAAAGTG
TGGGTTCCAGAAAACCCAAGCAACCAAAACTCAGAACTGTAGAGCCCTCT
TTATACAGACACATCCAGGAAACACTCCAGCACCTGAGGGTCAGGAAAAT
TTTCAAAGGAGCGGG
NCCCGATGAAGTGNGAGGCCTGGNGGNNGNCTGGTTTCCTACTTGACGTG
AANNANAGAAGGTTACGNGCATCTGAGGGGAGNCNACNNNCNAACAAANC
GGGCACANACACANCNCATCACCCCCACCACCCCNCCACGGGNNCGGGCN
CACAAAGGGAAACAAGCCAGCGGGACAGAGAAGGGGGGACNCCGCGGNNN
ACNNAAANNCNANACNNGGACCCCAGGCAAGGGACANNNCCCCNGGNATT
TTATAAGTCCAAATATTTGTTCAGAGGGCTTTGTGTTTCACTACTCCTGA
GTTGGGNCANAGCTTTTTTTTTTCANANNNANAAGGGAAAGAGNNCCGGG
CACCATATGATCAAACCCCCACCAAACGGNCAACANGGGGNNCGGNNGCN
NCNNNGCNGNCACNGACCAGGAACCCAAGAGACGGAACACNACCNANGAC
NAAGGGCNAGNGCAAGAAGNANAAANNCGGNNCCGAACGGGCGGNGAGCG
ACANCGGACANCNCCACCGAANNCAANANGNCCANGGCAANNNNANNNGA
CNCNNGGAAGNGCGCGCAAAGCCCGCGAAAGAAANAANAGCCACCCCCAA
CGCCCGGNCAGAGACCGCCCCCAGGGCCCCCGGCGGAAACCAAATTTCTT
TTGAAATACAGGACCTCACATACAACAATACAGTAGTTATAGAGAACCTG
CACACATCCTCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_l11.b1 MSMg01no480_l11.b1 CHROMAT_FILE:
MSMg01no480_l11.b1 PHD_FILE: MSMg01no480_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:06 2005
         (547 letters)



>mm_chr3_129825667_129826614
          Length = 948

 Score =  919 bits (475), Expect = 0.0
 Identities = 532/561 (94%), Gaps = 19/561 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaaaaaacccgattcaatggtggtcttgaaccaaaattttgacacagtaagaagctt 60
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 201 aaaaaaaaaacccaattcaatggtggtcttgaaccaaaattttgatacagtaagaagcta 260

                                                                       
Query: 61  tgttgtgtatatcatagaaatttatggctaagcagagttagaggttacttagtgtttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgtgtatatcatagaaatttatggctaagcagagttagaggttacttagtgtttcat 320

                                                                       
Query: 121 ggaataggaacgttagatttattgagcttaagaaatttgactatggtggtcacttgaaat 180
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ggaataggaactttagatttattgagcttaagaaatttgactatggtggtcactggaaat 380

                                                                       
Query: 181 ccaagactaaatcccttgccatccccattctctatgcaggaatcttctcttctctttttc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 381 ccaagactaaatcccttgccatccccattctctatgcaggaatcttctcttctc-tttac 439

                                                                       
Query: 241 nat--cnaaaacctacatgatatactgctgttgtcatcgtgtgtggtgtgtgtgtgtgtg 298
            ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cataactaaaacctacatgatatactgctgttgtcatcgtgtgtggtgtgtgtgtgtgtg 499

                                                                       
Query: 299 tgt--------------gtgcgtgcgtgtgcatggctgtacatgagggcaagaagttaag 344
           |||              |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtgtgtgtgtgtgtgcgtgcgtgcgtgtgcatggctgtacatgagggcaagaagttaag 559

                                                                       
Query: 345 tcagatgtctccctcaatcagtcaccattttattttttgagatggaatttctcactgaat 404
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 560 tcagatgtctccctcaatcagtcaccatcttattttttgagatggaatttctcactgaat 619

                                                                       
Query: 405 tcagagctcatcaattagctaggctggctagccagcacaccccaggactcttccggttgt 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 620 tcagagctcatcaattagctaggctggctagccagcacaccccaggactcttccggtcgt 679

                                                                       
Query: 465 tgcttccttagtgttgggataacagacatacatcactgcactcagttatttaaaaag-tg 523
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 680 tgcttccttagtgttgggataacagacatacatcactgcactcagttatt-aaaaaggtg 738

                                
Query: 524 tgggttccagaaaacccaagc 544
           |||||||||||||||||||||
Sbjct: 739 tgggttccagaaaacccaagc 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 948
Length adjustment: 10
Effective length of query: 537
Effective length of database: 938
Effective search space:   503706
Effective search space used:   503706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)