BAC Information

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BAC

Clone NameMSMg01-480P09
Chromosome3 (Build37)
Map Location 42,001,566 - 42,001,902
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
Downstream geneLOC100039204, LOC100039219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480P09.T7 (MSMg01no480_p09.b1)MSMg01-480P09.TJ (MSMg01no480_p09.g1)
ACCAG561478AG561479
length727722
length of high quality
(start - end)
329 (327 - 655)570 (77 - 646)
definitionCHROMAT_FILE: MSMg01no480_p09.b1 PHD_FILE: MSMg01no480_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:25 2005CHROMAT_FILE: MSMg01no480_p09.g1 PHD_FILE: MSMg01no480_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGC
GGAATTCACCAGGTGTCCACACACTGGAAAATTGGTGCACCTTTCAGTGA
ATTTAGGATGCTAGATTCCGAGGTAACCGCTGCAGAGCCTGGGTTTATGA
GAGTGTGCCCCCATCTAGCTGTAGAAATTTGGGATTGCTTATAGGTTTGG
CAGCAGTCAGTCACAAGGGTTAGATGACTAGGACTGTGAGCAAGTTCCAC
AGCTAGCAAACTGAGAGAAGTCAGGTGGCAGCCACATGGAGTTAGCCATG
GAGGTGGCCAGATGAATTTTTTTGTATAGTGTGGATTTTTTTAATTAATA
CATACAACACAGGGCAACACTGGATGAAGTAAGTAAGATAAAAGAAGAGC
AAACGCTTTCAAAAATGTCAAAACACAGAAAATCTGCAGAATCCATGACA
CAAGGAACTGTGTAGATGATTGCTCCCTTGGTACCATGCCATCTCAACAT
AGCTCTGAGGGTTATCTTGACTTCAGACCTCCTCCAAAGAATCACAACAA
ACGCCACCAAAACACCTCCATTTGGGTGACACCCATTGCTGCATGGCTCC
TCCTTCAAGCTCCTCCTTCAAGCTATCCCTGTGGTTTCCTCTTTTGCTGC
TCAGACCTGTACAATCCATACCTTCAGCAAGCCTTCCTTGAATGACAATA
ATCTGAGTTGTCATCTTAGAACCAGAC
CACGATGCAGTGNGAGGCCTGGCGGCCGCCTGGTCAAAATCAGGGGGTNG
AACTATAGAATGTCAAAAAAAAGTCTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATTAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGAT
CAAAAACTCAGGTGACAGCAGATTCTGGCGAGGATGTGGAGAAAGGGGAT
CTCTCCTCCATTTTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGAGGTTCNCTGATTATTGGACATAGTACTACCGGAGGATCCC
GCAATATCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAA
GAACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAATGAATTT
ATGAAATTCCTAGGCAAATGGATGGACCTGGAGGTTATCATCCTGAGTGA
AGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTG
GATATTAGCCCAGATACTTAGGATACCCAAAATATAAGATACAACTTGCC
AGACGCATGAAATTCAAGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_p09.b1 MSMg01no480_p09.b1 CHROMAT_FILE:
MSMg01no480_p09.b1 PHD_FILE: MSMg01no480_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:25 2005
         (329 letters)



>mm_chr3_42001420_42002145
          Length = 726

 Score =  493 bits (255), Expect = e-144
 Identities = 313/341 (91%), Gaps = 16/341 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgtgga-tttttttaattaatacatacaacacagggcaacactggatgaagtaagta 59
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 483 tagtgtggattttttttaattaatacatacaacacagggcaacactggataaagtaagta 424

                                                                       
Query: 60  agataaaagaagagcaaacgctttcaaaaatgtcaaaacacagaaaatctgcagaatcca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agataaaagaagagcaaacgctttcaaaaatgtcaaaacacagaaaatctgcagaatcca 364

                                                                       
Query: 120 tgacacaaggaactgtgtagatgattgctcccttggtaccatgccatctcaacatagctc 179
           ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||
Sbjct: 363 tgacacaaggaactgtgtagatgattgttcccttggtgccatgtcatctcaacctagctc 304

                                                                       
Query: 180 tgagggttatcttgacttcagacctcctccaaagaatcacaacaaacgccaccaaaacac 239
           ||||||||||||||||||||||||||||||||||||  ||||||    ||||||||||||
Sbjct: 303 tgagggttatcttgacttcagacctcctccaaagaaagacaaca----ccaccaaaacac 248

                                                                       
Query: 240 ctccatttgggtgacacccattgctgcatggctcctccttcaagctcc-----------t 288
           |||||||||||||||||||||||||||||||||||||||||||||||            |
Sbjct: 247 ctccatttgggtgacacccattgctgcatggctcctccttcaagctcagaggtgtaagat 188

                                                    
Query: 289 ccttcaagctatccctgtggtttcctcttttgctgctcaga 329
            |  || ||||||||||||||||||||||||||||||||||
Sbjct: 187 gcagcatgctatccctgtggtttcctcttttgctgctcaga 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 726
Length adjustment: 9
Effective length of query: 320
Effective length of database: 717
Effective search space:   229440
Effective search space used:   229440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)