XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTTCATGTCTGAAATCAGATATAATCTTAGTCATTTTAAAAGCCTTAGA
AATGAAAAGAGAAATCGATTCTTTTTGATACTTGTTTGAAAACATAGAAC
TCCTCTCAAAAGCTTACCTACTTCTCAAAAAGTAAAGAAAAAAAAAAGAA
AAAGAAAAAACAACCATGTCCAACTCAGAATCAGAATGTCTCATTCCACT
TCCAAAACACTGCAGGGACTCCTAGTCATGTCTTAGGAAATAATAACTCC
TTAGCCAGGTAACTTGGTGGTGACAATAAGCTGAGAGGTGCTGCTGTTTA
TGATCACACAACAGCAACAATGAGTTCAAATGGCAGATCTAGAGAAGAAT
TTTAAAATTTACACGAGATGGTTACCTCGCTGTGTGTCTCCTCAAGCTGA
GATCCTCAAATGAAATCTGGGTTTGAAGAGCATATCAGAACTTTCTTTCA
AAATACTCACAAAGCCATCTAACTGTCCCCATGTGTCACTTTAGATGATT
AGCTCCATGAAGAAGCTGTCAGACCAAGTCGCCACACTACTTCCTGACTC
CTCATTCAAGACCTTGTGTATGTGAGTGAATGTGAGTGTGTATGTATGTG
TGTNGTGTGTGTGAGAGCATATGCATTTGTGTGTGTGTGTGTGTGTGTGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNN
NTTTTTTNNTTNNTTNTTTT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTTTACTTATTTATTTATTTTTAACTCTAGAT
TTTATTCCCCTACTGGTACATCCTCCAACTGTTCCACATCCCATACCTCC
TCCCTGCCCCCCTGTTTCCAGGAGGATATCCCCACCCCCTGTCCCCACCC
TACCAGACCTCTAAACTCCCTGGGACCTCCAGTCTTTTGAGGATTAGGTG
CATCTTCTCTGACTGAACCATTACCAGGCAGTCCTTTGTTGTATGTGTTG
GGGGCCGAATATAAGCTGGTGTATGCTGTCTGGTTGGTGTTACACAATGG
AATGCTACTCAACTATTATGAATGATGACATCCTGAGTTTTGCAGGCAAA
TGGATGGAACTTGAAAATATCATCCTGAGTGAGGTAACTCAGACCCAAAA
GGACATGCATGCTATGTACTCATTAATAAGTAGATATTAGCAAAAAAAAA
AAAGTGCTGAATACCCAAGATACAGCACACAGAACTCAAAAAGGTAAACA
AGCTGAAGGGCCCAAGTGGTGAGAATGCCTTAGTACCACTTGGGAGGGAG
AAGAAAGCAGCCACAAGGGGGAAGGGAGGGAAGGACCTGGTAGGGAAAAG
GGATGAGGGGTGTTTGTANNAGAGGGGAACATNANNTGGNTNTTTGGNNT
NNNNNTNNNNNNTTTNTTNNTTTTNTNTNTTTTTTTTTTTTTTTTTNTTT
TTTTTTTTTTTTTTTTNTTTTTTTTTTT

Query= MSMg01no481_e13.b1 MSMg01no481_e13.b1 CHROMAT_FILE:
MSMg01no481_e13.b1 PHD_FILE: MSMg01no481_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:53 2005
         (659 letters)



>mm_chr3_80476498_80477555
          Length = 1058

 Score = 1125 bits (582), Expect = 0.0
 Identities = 636/656 (96%), Gaps = 7/656 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttcatgtctgaaatcagatataatcttagtcattttaaaagccttagaaatg 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 gaattcatttcatgaccgaaatcagatataatcttagtcattttaaaagccttagaaatg 881

                                                                       
Query: 65  aaaagagaaatcgattctttttgatacttgtttgaaaacatagaactcctctcaaaagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 aaaagagaaatcgattctttttgatacttgtttgaaaacatagaactcctctcaaaagct 821

                                                                       
Query: 125 tacctacttctcaaaaagtaaag-aaaaaaaaaagaaaaagaaaaaacaaccatgtccaa 183
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 820 tacctacttctcaaaaagtaaagaaaaaaaaaaagaaaaagaaaaaacaaccacgtccaa 761

                                                                       
Query: 184 ctcagaatcagaatgtctcattccacttccaaaacactgcagggactcctagtcatgtct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ctcagaatcagaatgtctcattccacttccaaaacactgcagggactcctagtcatgtct 701

                                                                       
Query: 244 taggaaataataactccttagccaggtaacttggtggtgacaataagctgagaggtgctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 taggaaataataactccttagccaggtaacttggtggtgacaataagctgagaggtgctg 641

                                                                       
Query: 304 ctgtttatgatcacacaacagcaacaatgagttcaaatggcagatctagagaagaatttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ctgtttatgatcacacaacagcaacaatgagttcaaatggcagatctagagaagaatttt 581

                                                                       
Query: 364 aaaatttacacgagatggttacctcgctgtgtgtctcctcaagctgagatcctcaaatga 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 580 aaaatttacacgagatggttacctcgctgtgtgtctcctcaagctgagatcctcaagtga 521

                                                                       
Query: 424 aatctgggtttgaagagcatatcagaactttctttcaaaatactcacaaagccatctaac 483
           |||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||
Sbjct: 520 aatctgggtttgaagagcatatcagaacttcctttcaat-tactcacaaagccatctaac 462

                                                                       
Query: 484 tgtccccatgtgtcactttagatgattagctccatgaagaagctgtcagaccaagtcgcc 543
           ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 461 tgtccccatgtatcactttagatgattagccccatgaagaagctgtcagaccaagtagcc 402

                                                                       
Query: 544 acactacttcctgactcctcattcaagaccttgtgtatgtgagtgaatgtgagtgtgtat 603
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 401 acactacttcctgactcctcattcaagaccttgtgtacgtgagtgaatgtgagtgtgtat 342

                                                                   
Query: 604 gtatgtgtgtngtgtgtgtgagagcatatgcatttgtgtgtgtgtgtgtgtgtgtg 659
           ||||||||||   |||||||||  |||||||||||| ||||| ||| |||||||||
Sbjct: 341 gtatgtgtgt---gtgtgtgag--catatgcatttgcgtgtgagtgagtgtgtgtg 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space:   680152
Effective search space used:   680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)