Query= MSMg01no481_j11.b1 MSMg01no481_j11.b1 CHROMAT_FILE:
MSMg01no481_j11.b1 PHD_FILE: MSMg01no481_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:16 2005
(688 letters)
>mm_chr3_55094182_55095269
Length = 1088
Score = 1323 bits (684), Expect = 0.0
Identities = 687/688 (99%)
Strand = Plus / Minus
Query: 1 aagacagctttgtttggaaagtccagcaaagagcgcttgaaaaatcttacctggagcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 aagacagctttgtttggaaagtccagcaaagagcgcttgaaaaatcttacctggagcaga 829
Query: 61 actaatttggaaggaaagcttcaggggacattgaatcttttagaacacgactctcatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 actaatttggaaggaaagcttcaggggacattgaatcttttagaacacgactctcatcaa 769
Query: 121 tcaaatgttaagacaacatggccagcatgcaacagaaatgaaatcaggaaacgaggggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tcaaatgttaagacaacatggccagcatgcaacagaaatgaaatcaggaaacgaggggaa 709
Query: 181 aagcacacatcaggaattggggctctttctccagctgagaccagcagttaacttactgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aagcacacatcaggaattggggctctttctccagctgagaccagcagttaacttactgca 649
Query: 241 gtggattcaagctctgtgattaggccatgtgaattcaggaatgctaagaaggtgacacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gtggattcaagctctgtgattaggccatgtgaattcaggaatgctaagaaggtgacacca 589
Query: 301 ttaccaaggacgtgacaggggatggcgcctgcatttgtcgtccccttgttggcagtacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttaccaaggacgtgacaggggatggcgcctgcatttgtcgtccccttgttggcagtacct 529
Query: 361 ctctttctcagttccacctcacctccctttactctatggtctttcacgcaagttaaactt 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 528 ctctttctcagttccacctcacctccctttactctatggtctttcacacaagttaaactt 469
Query: 421 gattcccgtaagaagccaggtccatctacctaactctgacacaccaacctcttcccacct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gattcccgtaagaagccaggtccatctacctaactctgacacaccaacctcttcccacct 409
Query: 481 tgatccttgcttgcaccgccatggcgtcaagctattttgtggtgatttggatcatcagct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgatccttgcttgcaccgccatggcgtcaagctattttgtggtgatttggatcatcagct 349
Query: 541 gtctttagtttgtgcctttctttggctcgcacagaagtgacattgagcttatgtgtactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gtctttagtttgtgcctttctttggctcgcacagaagtgacattgagcttatgtgtactt 289
Query: 601 catggtatatttacatatgatctaaaacgtttaagttccgtgactttagtgtcattccta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 catggtatatttacatatgatctaaaacgtttaagttccgtgactttagtgtcattccta 229
Query: 661 ttaaacgactggaaagcaaccattctgg 688
||||||||||||||||||||||||||||
Sbjct: 228 ttaaacgactggaaagcaaccattctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_j11.g1 MSMg01no481_j11.g1 CHROMAT_FILE:
MSMg01no481_j11.g1 PHD_FILE: MSMg01no481_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:16 2005
(620 letters)
>mm_chr3_54909589_54910614
Length = 1026
Score = 1093 bits (565), Expect = 0.0
Identities = 609/627 (97%), Gaps = 8/627 (1%)
Strand = Plus / Plus
Query: 1 aatccgctcaaccttacaggttttctgtgtggtggctcggtccactgctccacacagaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 aatccgctcaaccttacaggttttctgtgtggtggctcggtccactgctccacatagaac 260
Query: 61 agcagtttttt--ctgcacggctttttagaaactatctaggtttcatgactcagaattgt 118
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagttttttttctgcacagctttttagaaactatctaggtttcatgactcagaattgt 320
Query: 119 gtgttgtagcaagttcaaaagtcgcctgcattctttctgctggttttggttctgcccagc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttgtagcaagttcaaaagtcgcctgcattctttctgctggttttggttctgcccagc 380
Query: 179 ttactgtaggatgttccccgagattctgagttgagaacatggcatgcactcctcagaaga 238
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 381 ttactgtaggatgttccccgagattctgagttga-aacacggcatgcactcctcagaaga 439
Query: 239 caggggcagataccctgtgactctggtttgcgtttccatggcgtgaatgttgaaattatg 298
|||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caggggcagaaaccccgcgactctggtttgcgtttccatggcgtgaatgttgaaattatg 499
Query: 299 atgggtgacatcagtattcttgccgtgtgtaacgtgtcagtgtgatgatttaattgccac 358
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 500 atgggtgacatcggtattcttgccatgtgtaacgtgtcagtgtgatgatttaattgccac 559
Query: 359 cttgccaaacattcgagtcacgtgagtagggagcc-----agagctcttctgtcatgttc 413
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 560 cttgccaaacattcgagtcacgtgagtagggagcctcaccagagctcttctgtcatgttc 619
Query: 414 tcatatgttcaacccttctgttccttctcaggaaatactgggcgtcggtcacatgatcgc 473
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 tcatatgttcaacccttctgttccttctcaggaaatactgggcgtctgtcacatgatcgc 679
Query: 474 gttgtcacagagacccgatcagactctgaatttcagtgtggacaaccaggctccaggggc 533
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gttgtcacagagacccgattagactctgaatttcagtgtggacaaccaggctccaggggc 739
Query: 534 tgcgctcttgcacagcctgctcggcagcttgtttcttcctccgagagccagggctttgca 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcgctcttgcacagcctgctcggcagcttgtttcttcctccgagagccagggctttgca 799
Query: 594 tagattatcttatttaatcccgggcat 620
|||||||||||||||||||||||||||
Sbjct: 800 tagattatcttatttaatcccgggcat 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1026
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1016
Effective search space: 619760
Effective search space used: 619760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
