GCGTGTGAGTGTGGTTGGGGCGTGCGCGGTGTCATGTGTCGTTTCTCTCC
CACTACATGCCTCCGTATATCTCCAGCGTTGTATATTATTTATCTACATA
AGTGTGTCTACTATGCGATCTCTGCAGAAGTTATGTTGCTATCCTTTATC
GCATCATCTGACTATAGACGTCTGTATTTGTATTGGCGGTTGTTTTGTAT
GTGTGGCTGGTCTCTGCTCCTCGTCCTGGCTCGAAGCCATGTTGGTGATG
GTGCGTATGTGTCTCTGTTTTGCCGTGATGTTCTGGGTGTGAATCGGTTA
TGAGTGAGAGGCGGGCTTTGATGTGGGGAGCCCCGTCAACTGTTGGCTCC
TCGTTAGTTGGTTAGTGGGTTAATGATGGTGGTTCTATGCCGCGCGTGAG
GTTAGCGTGGACATCCGCTTACTATAACAGTAGCAAGGGAGGGTGGTGAC
AGATCTTCCGAAATCGAGAACCGAACTCAGACATCGATAGGATTCATGAC
CGCCGTAGTTTGCGAGCGCGCTGGGACATGTGTGGTGGAGTGGTATGGTG
TCGTTGCCATAGCCCTCGGTAGGCATAGGTGGGTACTTGTTGGGAGACGA
GTGGCGGGGTGGTGGTATGACTTGGCCGACGCCTGTTCTGGAATGCGCGT
GTTATGTGTCTCTTTCGTGTGGTTGTATAACGGTAGCGGGTATCGGTGCC
GATGTGGAGTGACTATGGGGACGTGAGCGTGTAGTGGTATGGGTGTGCTG
CCGAAGCTGCGATACGGTATCATATACGAGTGACGCGTGTAAGTGCGTCG
GTTCTTTAGCGTCCAGCATGATGAGGGGAACGATGTTACTGTGTGCATTG
TGGGCGAGTAGGTCTGTGCAGGAAGNATTGGGACGCGCGGGTGAGTCGCA
GAGCGAAGCGCGGGTGGTGGATGGCTGATGTCACCGAGACGGCGTGGTTA
CGCGCGTATGTGGAGCGATACTGATACTGAGATGAGTGCTGCGGGAAGTG
AAGCCGACATATATGTAGCTCAGTGATGTGTCTAATGTGACAGTGCGAAG
CAGTGCATGAGATCTGAGTATACTAGTCACGTAGTATGCGGGATGATACG
CACGAGAGCAACTGGCTGTGTAGCGGAATGTGCAGAGAGAGTACGGTGAG
CGTCGCGCGTTCGTGTACTGTGTAGCGAGAAGTTGTGTGTCTCGNCTCNT
CTCNTCTCACCAGCTN

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGTGGTGTTCTAATTAGCATTCACTG
TCAAGCCAAGAACTTGACAGAGCCAAGAATCTTCTCTAAAAAGTGCCCTG
ATGAATAACTGTCTTTATCAGGTTAGAGTTGTCTTGATTATTCATTGATG
CAGGAGGGCCTAGTCCATTGTGGGCTCTCCTTAGAGAGTTGGGCTTGATT
GTATAAGAAACTAGCTAAGCATGAGCCCATAAACCAGAAAGCCACCCAGA
AAGTGAGTTAGCGAACAGTACTGTTGCTTGATTCTTGTCTATAAGTGTCT
GCCTGGAACCCCTTCCCTGACTTTCCTTAACGATGAATTGTGACCTAGAA
GAGTAAGACATACTCCCCAAGCTGCTTTTTGGTCAGAGTGTTTTATCACA
GCCACAGAAGAAACTACAGGTGGTACGAGATGACTCATATTCTCTGGACT
CTCAGACCCTGGAGGAGAAATAGACCTGGCTCAGCAAGTATATATAAAGT
GTATCCCTAGTGTTGTGGGAGTATAAACTATGGTGACTCACTTTCCTAAG
GAAGCTTTTAAGAACTCACATAAGGGACAACATTTGATCTAGGATAGGAA
AGTTAAGTAGGAGAGGCGGGTAAGACTATCCAGTCAGAACAGATGTATGC
TGAAACAAGGTGTATTGAGGGAAGTATTAAAGTCTACAGCACGAGTCAAG
AGACAAGAGN

Query= MSMg01no481_k22.g1 MSMg01no481_k22.g1 CHROMAT_FILE:
MSMg01no481_k22.g1 PHD_FILE: MSMg01no481_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:24 2005
         (613 letters)



>mm_chr3_66004190_66005203
          Length = 1014

 Score = 1062 bits (549), Expect = 0.0
 Identities = 599/617 (97%), Gaps = 4/617 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtggtgttctaattagcattcactgtcaagccaagaacttgacagagccaagaatctt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 198 aggtggtgatctaattagcattcactgtcaagccaagaacttgacagagtcaagaatctt 257

                                                                       
Query: 61  ctctaaaaagtgccctgatgaataactgtctttatcaggttagagttgtcttgattattc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 258 ctctaaaaagtgccctgatgaataactgtttttatcaggttagagttgtcttgattatta 317

                                                                       
Query: 121 attgatgcaggagggcctagtccattgtgggctctccttagagagttgggcttgattgta 180
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 318 attgatgcaggagggcctagtccactgtgtgctctccttagagagttgggcttgattgta 377

                                                                       
Query: 181 taagaaactagctaagcatgagcccataaaccagaaagccacccagaaagtgagttagcg 240
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 378 taagaaactagctaagcatgagcccataaaccagaaagccatccagaaagcgagttagcg 437

                                                                       
Query: 241 aacagtactgttgcttgattcttgtctataagtgtctgcctggaaccccttccctgactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aacagtactgttgcttgattcttgtctataagtgtctgcctggaaccccttccctgactt 497

                                                                       
Query: 301 tccttaacgatgaattgtgacctagaagagtaagacatactccccaagctgctttttggt 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tccttaacgatgaattatgacctagaagagtaagacatactccccaagctgctttttggt 557

                                                                       
Query: 361 cagagtgttttatcacagccacagaagaaactaca---ggtgg-tacgagatgactcata 416
           |||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||
Sbjct: 558 cagagtgttttatcacagccacagaagaaactacaacaggtggatacgagatgactcata 617

                                                                       
Query: 417 ttctctggactctcagaccctggaggagaaatagacctggctcagcaagtatatataaag 476
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 618 ttctctggactctcagaccctggaggagaaacagacctggctcagcaagtatatataaag 677

                                                                       
Query: 477 tgtatccctagtgttgtgggagtataaactatggtgactcactttcctaaggaagctttt 536
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgtatccctagtgttgtgggaacataaactatggtgactcactttcctaaggaagctttt 737

                                                                       
Query: 537 aagaactcacataagggacaacatttgatctaggataggaaagttaagtaggagaggcgg 596
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 738 aagaattcacataagggacaacatttgatctatgataggaaagttaagtaggagaggcgg 797

                            
Query: 597 gtaagactatccagtca 613
           |||||||||||||||||
Sbjct: 798 gtaagactatccagtca 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1014
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1004
Effective search space:   605412
Effective search space used:   605412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)