Query= MSMg01no481_o17.b1 MSMg01no481_o17.b1 CHROMAT_FILE:
MSMg01no481_o17.b1 PHD_FILE: MSMg01no481_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:42 2005
(694 letters)
>mm_chr3_21328183_21329276
Length = 1094
Score = 876 bits (453), Expect = 0.0
Identities = 530/571 (92%), Gaps = 29/571 (5%)
Strand = Plus / Minus
Query: 5 gaattcctcattgttgcagttcagactcagtttctggctatcaaacacatgcaatgctat 64
|||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 570 gaattcctcattgtggcagttcagactcagcttctggccatcaaacacatgcaatgctat 511
Query: 65 gacttagactttgtgaatattttatagtcatcatgtttttccttccttgtggttttagat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 510 gacttagactttgtgaatattttatagtcatcatgtttttccttccttgtggatttagat 451
Query: 125 ctataaagggaaaggggtagtagaatgcatgctggtagcatcattagaggaaagggccac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctataaagggaaaggggtagtagaatgcatgctggtagcatcattagaggaaagggccac 391
Query: 185 caaaccatgactagacattgaggttgggagaggtctagaaaagaataacaaagtgtcaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 390 caaaccatgactagacattgaggttgggagaggtctagaaaagaataacaatgtgtcaaa 331
Query: 245 attagggtatccaaggcttaaaagcaaggagggcttccctttaaaacctggagaggaacc 304
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 330 attagggtatgcaaggcttaaaagcaaggaaggcttccctttaaaacctggagaggaacc 271
Query: 305 tcataacacttgaagcaagagtaagaaagagagccatcaaaggatgacagggtagatcca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcataacacttgaagcaagagtaagaaagagagccatcaaaggatgacagggtagatcca 211
Query: 365 gaa--------------aagttccttcaacaaagaaaacatcaggctattataaattttt 410
||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 210 gaaaagaatctttagagaagttccttcaacaaagaaaacatcaggcttttataaattttt 151
Query: 411 gaggaccaggaatgaggttagttaagtatcttaacaaattatgtatgt-----------t 459
|||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 150 gaggaccaggaatgaggttagttaagtatcttaaaaaattatgtatgtgtatgtgtatgt 91
Query: 460 -tatgtgtatgtatatgtgtat-gtgaacatatgccttgagtatgctggtgtctatgaag 517
||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 90 gtatgtgtatgtgtatgtgtatggtgaatatatgccttgagtatgctggtgtctatgaag 31
Query: 518 gcttgaa-aacggtgtcagattgccctgaaa 547
||||||| || ||||||||||| ||||||||
Sbjct: 30 gcttgaagaa-ggtgtcagatttccctgaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_o17.g1 MSMg01no481_o17.g1 CHROMAT_FILE:
MSMg01no481_o17.g1 PHD_FILE: MSMg01no481_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:42 2005
(515 letters)
>mm_chr3_21154000_21154921
Length = 922
Score = 920 bits (476), Expect = 0.0
Identities = 508/522 (97%), Gaps = 7/522 (1%)
Strand = Plus / Plus
Query: 1 atatgcagaacctgagtataaatacaaaccaaaataaacagacctctaagggattcagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgcagaacctgagtataaatacaaaccaaaataaacagacctctaagggattcagga 260
Query: 61 tagctaccactggccaatgtattttaagtatg-ttttttctccccccccc------cttt 113
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 261 tagctaccactggccaatgtattttaagtatgtttttttctccccccccccccccgcttt 320
Query: 114 ctccttatctatttgtctctccttgtctctgctggcagacatttttttcaatgttgaata 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccttatctatttgtctctccttgtctctgctggcagacatttttttcaatgttgaata 380
Query: 174 agttaaagacttccctaaccaatggcctgcaacatgcatagagggaacattacaaacaca 233
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 agttaaagacttccctaaccaatggcctgcaacatgcgtagagggaacattacaaacaca 440
Query: 234 tggctgcagaagtgattggtaacacatggagaggtaaaattgactgcttagcaaacatga 293
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tggctgcagaagtgaagggtaacacatggagagctaaaattgactgcttagcaaacatga 500
Query: 294 tgtataattatatcaatcctatgtgttgtgttttatctgtgttttataaagagccaagta 353
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctcattatatcaatcctatgtgttgtgttttatctgtgttttataaagagccaagta 560
Query: 354 tatgttctatagagtgcagtatgataaagtgggaggggttcttcagtcggtccatgagga 413
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 tatgttctatagagtgcagtatgataaagtgggaggggttctttagtcggtccatgagga 620
Query: 414 gggattccttccccctgaggagccagtcatatgacaggtatagggtagattagggtttat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggattccttccccctgaggagccagtcatatgacaggtatagggtagattagggtttat 680
Query: 474 ttggggcatgggaaggaaagttgagagagggagagagggagg 515
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggggcatgggaaggaaagttgagagagggagagagggagg 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 922
Length adjustment: 10
Effective length of query: 505
Effective length of database: 912
Effective search space: 460560
Effective search space used: 460560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
