BAC Information

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BAC

Clone NameMSMg01-481P10
Chromosome3 (Build37)
Map Location 34,298,431 - 34,474,771
singlet/doubletdoublet
Overlap geneEG665636
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727
Downstream geneEG622074, Sox2, LOC100041108, LOC665655, Ube2l3-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481P10.T7 (MSMg01no481_p10.b1)MSMg01-481P10.TJ (MSMg01no481_p10.g1)
ACCAG562246AG562247
length767752
length of high quality
(start - end)
288 (415 - 702)353 (69 - 421)
definitionCHROMAT_FILE: MSMg01no481_p10.b1 PHD_FILE: MSMg01no481_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:46 2005CHROMAT_FILE: MSMg01no481_p10.g1 PHD_FILE: MSMg01no481_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,298,431 - 34,298,718)(34,474,419 - 34,474,771)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCAATAAATGGGCGGAATTC
CATGCAATTTCAAATAAATCATATTCATCTCCAACTCCTCCCTTTGAGTT
CTCCCAGACTCACCCCACCTCCCTACACCTCTAACTTCTTGGGATTGTTG
CTTTTCAATAACTTGTTGATTCTAACGTGTTCTGTCTATATTCTCTTTAG
TGTTGAACCACATGGTTTATCTACCATGAGCCTTATCATTAAAAAATATT
AGGGGACTCTCTTTTGTCAGAAGTCAGTAGCTCCACAGTTAGAGATTTCT
TCCTCTTCTACACTGTGATGNTGACTGGGTTGATTTTGTGCTATGGGTTC
ATGAGTATAAAGGGCCTGACATATCCAGAAGACAGCATTTTGTTCTGATC
CTCCTCTCCCCCCCCTCTTACCAACCCTCCCTCTTCCAAGATGATCCCCT
GAGCCTTGGGGGCGGGCAATATAGATGTCCCATTCGTAGCTGAACACTCC
CCAGTCTCAGCACCTTAACCAGTTGTGAGTTTCTGTGTTACCAACCATGT
GCTGTGTAGAGAGACCTGCTTGCTGAAGCATGAAAGCTGCAGTAATCTGG
GTGCAGGACCATCTGTCTGTGCCCGGGGTCTTCGGTGATGGGAGAGGACA
GAGACTTTCTGAGTGCCTGGACCCTGACCTGGAGTCACATCTGGTCCTCA
TCTTGGAGCTTCAGCTTCCTCTGTTACCCCTACAAGATATGAAAATCCCC
ATACACTAATACACGTN
CAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTTTGTAGATGAGGATGGTTGTGAATTCCTG
ATCCTCCTGCCTCAGCTTCTGGGAGTGCTGGGATTACTGGCACACACCAC
CATCTTCTGACAACAGGGTCTCACTGTATATTCTAGCCTGGCCTCCAGTT
CACCATCTTTCTGCCTCAGCCTCCGGAGCACCAAGTTTACCAGCACACAC
TTGTACACCCTACTTTAAGACTGCCCATTTCAAAGTTCTTACTCCAGAAG
CAGGGTAGAGCCAAGGGACACACACAGTTGAAAGTTGAAAGAGGAGCAGC
AGCCCTGCTGGTCTTGTCCTGGGGGCCACAAGGAGCGTGGCAGAATTCAT
GCCTCTTCGGAAGAATCTCAGGCAGACAGGGAGAAGGGGAGCGTTCACCC
GAAGGGAACGTGTTCTCGTTTTGCTGTAAATCTGGGTCCCTCTTAAAATC
AGTTACTTCACAAAATGGCAAGTCTACCTGACCTGTGTGTGTGTCCGCGC
GCACGTGTGCGCGCATGCATCCAATCGTGAATGGTGACTGTGTATACTTG
TGATGTGGGAATCTGGTGAGAGGTTTGTAAAAGAACCTTGCCAGTTGTGA
GGTGTAAGCTTACGGGGATGTAAAAGGAAAGCTTGGGGACAATAAACAGG
AGACCGTCTGGGTCTCTGCGGGCACCTGGCATTGTGCAGGCGGCAATCTG
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_p10.b1 MSMg01no481_p10.b1 CHROMAT_FILE:
MSMg01no481_p10.b1 PHD_FILE: MSMg01no481_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:46 2005
         (288 letters)



>mm_chr3_34298231_34298918
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttaccaaccctccctcttccaagatgatcccctgagccttgggggcgggcaatatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttaccaaccctccctcttccaagatgatcccctgagccttgggggcgggcaatatag 260

                                                                       
Query: 61  atgtcccattcgtagctgaacactccccagtctcagcaccttaaccagttgtgagtttct 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtcccattcgtagctgaacactccccagtctcagcaccttaaccagttgtgagtttct 320

                                                                       
Query: 121 gtgttaccaaccatgtgctgtgtagagagacctgcttgctgaagcatgaaagctgcagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttaccaaccatgtgctgtgtagagagacctgcttgctgaagcatgaaagctgcagta 380

                                                                       
Query: 181 atctgggtgcaggaccatctgtctgtgcccggggtcttcggtgatgggagaggacagaga 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgggtgcaggaccgtctgtctgtgcccggggtcttcggtgatgggagaggacagaga 440

                                                           
Query: 241 ctttctgagtgcctggaccctgacctggagtcacatctggtcctcatc 288
           |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ctttctgagtgcctgggccctgacctggagtcacatctggtcctcatc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no481_p10.g1 MSMg01no481_p10.g1 CHROMAT_FILE:
MSMg01no481_p10.g1 PHD_FILE: MSMg01no481_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:46 2005
         (353 letters)



>mm_chr3_34474027_34474779
          Length = 753

 Score =  636 bits (329), Expect = 0.0
 Identities = 347/353 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagatgaggatggttgtgaattcctgatcctcctgcctcagcttctgggagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actttgtagatgaggatggttgtgaattcctgatcctcctgcctcagcttctgggagtgc 686

                                                                       
Query: 61  tgggattactggcacacaccaccatcttctgacaacagggtctcactgtatattctagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgggattactggcacacaccaccatcttctgacaacagggtctcactgtatattctagcc 626

                                                                       
Query: 121 tggcctccagttcaccatctttctgcctcagcctccggagcaccaagtttaccagcacac 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 tggcctccagatcaccatctttctgcctcagcctccggagcaccaagtttaccggcacac 566

                                                                       
Query: 181 acttgtacaccctactttaagactgcccatttcaaagttcttactccagaagcagggtag 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 acttgtacaccctactttaagactgcccgtttcaaagttcttactccagaagcagggtag 506

                                                                       
Query: 241 agccaagggacacacacagttgaaagttgaaagaggagcagcagccctgctggtcttgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 agccaagggacacacacagttgaaagttgaaagaggagcagcagccctgctggccttgtc 446

                                                                
Query: 301 ctgggggccacaaggagcgtggcagaattcatgcctcttcggaagaatctcag 353
           |||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 445 ctgggggccacaaggagcgtggcagaattcatgcctctcctgaagaatctcag 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)