BAC Information

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BAC

Clone NameMSMg01-482J01
Chromosome3 (Build37)
Map Location 21,857,879 - 21,858,103
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665094, LOC100040325, 7530428D23Rik, LOC100039465
Downstream geneLOC100040353, Tbl1xr1, LOC545506, LOC675593, LOC100040378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482J01.T7 (MSMg01no482_j01.b1)MSMg01-482J01.TJ (MSMg01no482_j01.g1)
ACCAG562701AG562702
length704704
length of high quality
(start - end)
225 (52 - 276)615 (74 - 688)
definitionCHROMAT_FILE: MSMg01no482_j01.b1 PHD_FILE: MSMg01no482_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:30 2005CHROMAT_FILE: MSMg01no482_j01.g1 PHD_FILE: MSMg01no482_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTAATAGTCATTGAGGCGCGGAANTCACCAAATACCTACACAAGGA
GTTTATCCCTGAAGCTAATGCTGCTATCAATCCCCAGGGTTTCAGCTCTC
TGTTCCATTTGAGGATGCACATAGATGACACGTATGTGCCCATGTGATTG
TATTTGGGCCAATCAATGTAAACATGTCTCCCTGGCCAACCCCCACAAGC
ACTTTTCTGGGCTTAGGATCCTGGGTATCCGTAGGTTGGGTCTTCAAGGG
CTCTAAAGAGGAGTGCTCCTGTGATCTCATGACCACCGATTTTTTTTTTT
GAGCAAATCCTGACTCCCTTGAGGTCCAGAAGCTAGTTTGAACAGCTTGC
ACTGTGCTACGTGACACCCTTTGACTTTTCAAACTGTAAAGTGCCTCACT
AGAGCAAAAGTCATCAACGGCTCCCAGAAGCACCCCCCTCCTACCCTGAA
AAAGACTGCCTCTGCCTCCCCCATGTTGTTAGCGCGCCAATCCCACCGCT
TGGGCTATTGCCTTAACCTCTGCCACCCCTTCCCCTGTGCATACTTCCCC
ATCCCCTCCCAGCCCCCACTTATATCCCCTTTAACCATGCTTAGCACTCT
ACCTCCCAACCCCCTACACATTCTTCGCTCTACACATACCTGTCCTACCC
TTAGTATTTTTCTCTCCTCCCACTGCCTCTATCTCCCCCCAGCCCACCTC
TGTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTATCACATTTTTT
AATATGATTATTTGATTCTCTAGAATCTAACTTTTTAAAAAATAATTATT
TATTTTATGTATATGAGTACACTGTTCCTGTTTTCAGACACACCAGAAGA
GGGCATAAAATCCCCTTACAGATAGTTGTGAGACACAATGCAGTTGCTGG
GAATGGAACTAAGGCACTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGA
GCCAGCTCTCTAGCCCAGAATCTAACTTTTGAGTTCTTTATATATATTGG
ATATTGGCCCTCTATCCGATGTAGGGTTGGTAAAGATCTTTCCCCAATCT
GTTGGTTGCTGTTTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCT
TTGCAATTTTATGAGGCCCATTTGTCAATTGTTGATCTTAGAGCATTAGC
CATTGGTGTTCTGTTCAGTAATTTTTCCTCTGTGCCCATAACTTTGAAAC
TCTTCCCCACTTTCTCCTTTGTAAGGTTCAGTGTATCTGGCTTTATGTGG
AGGTCCTTGATCCACTTGAACTTGAGCTTTGTACAGGAGATTGATTTACA
TTCTTCTGCATGCTAACTACCAGTTGAGTCAGCACCATTTGTTGTAAAGG
CAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_j01.b1 MSMg01no482_j01.b1 CHROMAT_FILE:
MSMg01no482_j01.b1 PHD_FILE: MSMg01no482_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:30 2005
         (225 letters)



>mm_chr3_21857679_21858303
          Length = 625

 Score =  420 bits (217), Expect = e-122
 Identities = 223/225 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatccctgaagctaatgctgctatcaatccccagggtttcagctctctgttccatttg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 425 tttatccctgaagctaatgctgctatcaatccccagggtttcagttctctgttccatttg 366

                                                                       
Query: 61  aggatgcacatagatgacacgtatgtgcccatgtgattgtatttgggccaatcaatgtaa 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aggatgcagatagatgacacgtatgtgcccatgtgattgtatttgggccaatcaatgtaa 306

                                                                       
Query: 121 acatgtctccctggccaacccccacaagcacttttctgggcttaggatcctgggtatccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 acatgtctccctggccaacccccacaagcacttttctgggcttaggatcctgggtatccg 246

                                                        
Query: 181 taggttgggtcttcaagggctctaaagaggagtgctcctgtgatc 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taggttgggtcttcaagggctctaaagaggagtgctcctgtgatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)