CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGATATCCACTATTTTGTTTCAGCCACCGTTTTTTAAACATTT
AGTGAGAAAAATGTGTGTGAGAATTTATTGTCAGGAAGACCACTGAGTTC
ACAGTGTATCATTCAGGATAATTAAACATGTTTTAAAATAAAGTTCCATC
ATAAGAAGGCATGCTAGGTAATAAGGGCACTTTAATAAGTGAATACATGC
ATGAAAATGTGTCCTCTCCTGGGCAAAGTTTTATTTTTACAAGATAAACT
TGTGATTGACACTTGGGGGAAGGAATATTTATGTAAAAAGAAAAACCATT
TAGTTTATCAGCATCCACCCTGTTTGGTAAAGGAACACTTTTGCATCATC
TTGGACTGCTGAGCTTTGGTTTCAGGCTAGGGGCGAGGTTCAGTTGTTCT
AGTAAGTTGCTCCTTGTGAGGAAAAGGGCTGGACAAGGACTGATACATAG
ACAATAGTTTCCCTGGCTTTGGCACATTTGTCCAAGCTTAGCACTTAGAA
TGAAAATATATTTTGTTGTTCCCTTCAGAGAGAAGTCATGGTCTCAAGTT
ACAATGTTTCATTTATTTTAAAATCTTTGATTTGTTACTGAGAAGACAGA
AAAAGTTAAATTGTTCTCCAATAAACAAGAGGTGAATATGATTCATTACA
CAAGTGCCCTGTGAAGAAGTGACTCACAACAAATATTTTTTGCAGTCAAT
C

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTATGTGATGCTTGCATCTATGACT
CCCGATCTCTTTCCTAGATTTTCTAACACCAGGGTTGTCTCCCTTTGTGA
TGTTTTTCATTGTTTCTATTTACATTTTTAGATCTTGGATAGTTTTGTTC
ATGTTCTTGGCCCATTTGATTGTGTTTTCCTGTAATTCCTCAAGGAATTT
TTGTGTTTCCTCTTTAAGGGCTTCTATCTGTTTACCCATTTTCTCCTGTG
TTTCTTCAAGAGAGTTATTTATGTTCTTAAAGTTCTTTATCATCCTCATG
AAAAGTAACTTTAGATTCGAGTCCTTCTTTTCCGATGTGATGGTGTATCC
AGGACTTGGTATGATGGTAGAATTTGGTTCCCCTGATGCCAAGTAACCAT
GGTTTCTGTTGCTTATGTTCTTAAACTTGCTTCCCCAAATCTGAATATCT
ATAGTGCTACCTACCCTCACTATATCTGACTGGAGCCTGCCCTTCCTGTA
ATCATGATTCTGTCAGAACTCCTCAGAGTACAGATGTGTCTGTAATCCTG
TGGTTCCTGGTATCCCATGTTCCTGAGATTCTGGGTGTGTCAGAGTTTCT
GGGAGTTAAGGTGCCTCTGGGACCCTGAGCTCCTTGTGTGTGACCAAGTT
CTT

Query= MSMg01no482_j02.b1 MSMg01no482_j02.b1 CHROMAT_FILE:
MSMg01no482_j02.b1 PHD_FILE: MSMg01no482_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:30 2005
         (698 letters)



>mm_chr3_17223327_17224424
          Length = 1098

 Score = 1268 bits (656), Expect = 0.0
 Identities = 683/692 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggatatccactattttgtttcagccaccgttttttaaacatttagtgagaaa 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggaaatccactattttgtttcagccaccgttttttaaacatttagtgagaaa 264

                                                                       
Query: 65  aatgtgtgtgagaatttattgtcaggaagaccactgagttcacagtgtatcattcaggat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgtgtgtgagaatttattgtcaggaagaccactgagttcacagtgtatcattcaggat 324

                                                                       
Query: 125 aattaaacatgttttaaaataaagttccatcataagaaggcatgctaggtaataagggca 184
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattaaacatgttttaaaatagtgttccatcataagaaggcatgctaggtaataagggca 384

                                                                       
Query: 185 ctttaataagtgaatacatgcatgaaaatgtgtcctctcctgggcaaagttttattttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttaataagtgaatacatgcatgaaaatgtgtcctctcctgggcaaagttttattttta 444

                                                                       
Query: 245 caagataaacttgtgattgacacttgggggaaggaatatttatgtaaaaagaaaaaccat 304
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 caagataaacttgtgattgacccttggaggaaggaatatttatgtaaaaagaaaaaccat 504

                                                                       
Query: 305 ttagtttatcagcatccaccctgtttggtaaaggaacacttttgcatcatcttggactgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttagtttatcagcatccaccctgtttggtaaaggaacacttttgcatcatcttggactgc 564

                                                                       
Query: 365 tgagctttggtttcaggctaggggcgaggttcagttgttctagtaagttgctccttgtga 424
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 tgagctttggtttcaggctaggggtgaggttcagttgttctagtaagttgctccttgtga 624

                                                                       
Query: 425 ggaaaagggctggacaaggactgatacatagacaatagtttccctggctttggcacattt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaaaagggctggacaaggactgatacatagacaatagtttccctggctttggcacattt 684

                                                                       
Query: 485 gtccaagcttagcacttagaatgaaaatatattttgttgttcccttcagagagaagtcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtccaagcttagcacttagaatgaaaatatattttgttgttcccttcagagagaagtcat 744

                                                                       
Query: 545 ggtctcaagttacaatgtttcatttattttaaaatctttgatttgttactgagaagacag 604
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggtctcaggttacaatgtttcatttattttaaaatctttgatttgttactgagaagacag 804

                                                                       
Query: 605 aaaaagttaaattgttctccaataaacaagaggtgaatatgattcattacacaagtgccc 664
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaaaagttaaattgtcctccaataaacaagaggtgaatatgattcattacacaagtgccc 864

                                           
Query: 665 tgtgaagaagtgactcacaacaaatatttttt 696
           ||||||||||||||||| ||||||||||||||
Sbjct: 865 tgtgaagaagtgactcaaaacaaatatttttt 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)