BAC Information

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BAC

Clone NameMSMg01-482K19
Chromosome3 (Build37)
Map Location 96,411,823 - 96,412,480
singlet/doubletsinglet
Overlap gene6330549D23Rik
Upstream geneGolph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34
Downstream geneRbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482K19.T7 (MSMg01no482_k19.b1)MSMg01-482K19.TJ (MSMg01no482_k19.g1)
ACCAG562784AG562785
length731762
length of high quality
(start - end)		498 (71 - 568)659 (74 - 732)
definitionCHROMAT_FILE: MSMg01no482_k19.b1 PHD_FILE: MSMg01no482_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:38 2005CHROMAT_FILE: MSMg01no482_k19.g1 PHD_FILE: MSMg01no482_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGCTGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTCATCCTCTAAGTATATCAACCCCAATTATACATTCTG
AAACTGGAGAAATGGCCACAAGTTGTGTTCAGGGACCTACTGTGAGTCAG
ACATCAGTCAAAATTCCATTAATCATCTTTCCTCCATAAATCCCTACTTT
AACTGGAGGGCCTCAATGTTTCTTGGGATCGATCTCCTGGGATCATTGTC
AATTCAGAACCAGTATCCAATAGACCCTGGAAAGTCTGATTATTTCCTTT
CCTACAGTGTACAGTTAGTTACCCTTATAAAAGGCTATATAGGTCCCTCT
GGGGAAGAACTGGAGAAAGACTGGCAGTAGAAATTTTAGGTGTCCTATCA
AGATCCTTCCTCAGGGGAACCTGGCCACCCCTTCATTCAAGGCAAACTGG
TTCAAGCCTGGAAATTGATTCACTGGCTGAGACTGACTTTTGCCATGATC
CAATGTAGCCTTCACTTCATTTATTTGAGAATTTTTCTGGATTATTTTTC
ATTCCAGATATAGTCAAGTTGGCAACCAGGAATAGCCACCACACCGTCTT
TTAATCCATTTAAAAAGTAAACACTAACATTTTTAAAATAAGGCGGAAGT
TAACAACCAATGTCAATTCTTAAAACCCAAGTTGTGACTGGTACCAAAAA
GCTATGATGCCAAAACTTAGGGATGACTTCT

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATCTTCATTGTCATTAGTGATGCCA
GCACCCATCTCATCACCTTCTTTGTTAAGTGCTATGGGCAAGACCAAATG
CCTGGACAAAACTGGGGGGCTGGAAATATCAGCTATGTCAATAAAGCCCA
CTATTTCCAAGTCTGTGTTAATGACTTTAGGGATGGGGTCAATTTCTTCA
TCTATAACAAAAGGCTCTGGCAAGACTTGTACATCAGCCGTTAGGTGGCC
ACACTTGAGAACAGTATGGAAAGGTGTGTACGCCAGATCTATCAGCTTTC
CAAACATAGATTGCACATTTTTCAAACACAGGGGGCCATCAATAGTAAAA
ATTTTCCCTTCACCATTAACCCTATGGTATACCAAGGCATACCAAGGAAT
CGGTGCTCTGAAGCTCCTCCAAGTTCGCCATGCACATGACATATAACTTA
GATGGGAAAGGGAAGGGGAGTGGAAACCTGTTGCTCTCACTTCTTTGATT
CTGAGTAGCTAGGGAGTGTCCCAGTGACCCCCTGCCAATACCAAGACAGC
CATCAGTCACCAGAACAACCTGGCAAGGAATCGCTCCACCCCATTCTTGC
TGGACAATATTGCAAACGCTGACTAATGCAGACTCCAAGCAGGTTTTGTC
ATAATCATCCATGTTACTCAGTGCTTCCTGCAAGGTGTTGTAGTCTCTCG
TGAGGCGACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_k19.g1 MSMg01no482_k19.g1 CHROMAT_FILE:
MSMg01no482_k19.g1 PHD_FILE: MSMg01no482_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:38 2005
         (659 letters)



>mm_chr3_96411623_96412680
          Length = 1058

 Score = 1236 bits (639), Expect = 0.0
 Identities = 654/659 (99%), Gaps = 1/659 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcttcattgtcattagtgatgccagcacccatctcatcaccttctttgttaagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcttcattgtcattagtgatgccagcacccatctcatcaccttctttgttaagtgct 260

                                                                       
Query: 61  atgggcaagaccaaatgcctggacaaaactggggggctggaaatatcagctatgtcaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgggcaagaccaaatgcctggacaaaactggggggctggaaatatcagctatgtcaata 320

                                                                       
Query: 121 aagcccactatttccaagtctgtgttaatgactttagggatggggtcaatttcttcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcccactatttccaagtctgtgttaatgactttagggatggggtcaatttcttcatct 380

                                                                       
Query: 181 ataacaaaaggctctggcaagacttgtacatcagccgttaggtggccacacttgagaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataacaaaaggctctggcaagacttgtacatcagccgttaggtggccacacttgagaaca 440

                                                                       
Query: 241 gtatggaaaggtgtgtacgccagatctatcagctttccaaacatagattgcacatttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatggaaaggtgtgtacgccagatctatcagctttccaaacatagattgcacatttttc 500

                                                                       
Query: 301 aaacacagggggccatcaatagtaaaaattttcccttcaccattaaccctatggtatacc 360
           |||||||||||||||||||||| |||||||| ||||||||||||||  ||||||||||||
Sbjct: 501 aaacacagggggccatcaatag-aaaaatttgcccttcaccattaagtctatggtatacc 559

                                                                       
Query: 361 aaggcataccaaggaatcggtgctctgaagctcctccaagttcgccatgcacatgacata 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 aaggcataccaaggaatcggtgctctgaagctcctccaagttcgccaagcacatgacata 619

                                                                       
Query: 421 taacttagatgggaaagggaaggggagtggaaacctgttgctctcacttctttgattctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taacttagatgggaaagggaaggggagtggaaacctgttgctctcacttctttgattctg 679

                                                                       
Query: 481 agtagctagggagtgtcccagtgaccccctgccaataccaagacagccatcagtcaccag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agtagctagggagtgtcccagtgaccccctgccaataccaagacagccatcagtcaccag 739

                                                                       
Query: 541 aacaacctggcaaggaatcgctccaccccattcttgctggacaatattgcaaacgctgac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacaacctggcaaggaatcgctccaccccattcttgctggacaatattgcaaacgctgac 799

                                                                      
Query: 601 taatgcagactccaagcaggttttgtcataatcatccatgttactcagtgcttcctgca 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taatgcagactccaagcaggttttgtcataatcatccatgttactcagtgcttcctgca 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space:   680152
Effective search space used:   680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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