BAC Information

Click to search

BAC

Clone NameMSMg01-483G09
Chromosome3 (Build37)
Map Location 35,146,770 - 35,147,115
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483G09.T7 (MSMg01no483_g09.b1)MSMg01-483G09.TJ (MSMg01no483_g09.g1)
ACCAG563336AG563337
length773855
length of high quality
(start - end)		343 (327 - 669)---
definitionCHROMAT_FILE: MSMg01no483_g09.b1 PHD_FILE: MSMg01no483_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:35 2005CHROMAT_FILE: MSMg01no483_g09.g1 PHD_FILE: MSMg01no483_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAGGATC
CGCGGAATTCCAGACTTCCGAAGTTAAGATACTTGCTAAAGTTTCACTAT
TTTTTTCTCTGCCCGGCTTGCCCATATCATGCATCTGTCATCAGTGGTAG
CTGCTCATGTGCTGTGGTTGATGCACACAAGTGTCTTTTATTCCTAGATG
GATAGTTTTACCCCAAGACTAAGGGTGAGGCCGTTGGTGAGGTATAACTA
TGGGAAGAACTCGTCCCCCAATTCTTCTTTCTTAATGAAAGAGCCATCCA
TACTTAATCAGTGAGAAGCTTATTTTTGCAAGGCTTCCCTACACACTGAT
AATTTATCTTCATTCAAAACCATCTTCAAATATCCAGAGTAGGGGTTGGG
AACGACCTTAGGCAATAGGCATTTAAGGTAAATAAGGAAAACATCTCCCT
TCCATCTGATGTTCCACTGCAGATTCTGAGACAGCAGTTGCCAATCATAT
GTGATTCCTGAGCTCTTGGGAGGTCTGTATAAGGATGTATTGAAACGTAA
GATGTGTACTAGACTGTCAAGACGTGATATATAGAAATAGTATGACATGC
CTCACTCATAATCTTTTCATGGATGCATATAAAAACAAATATTTTATTCA
TATTAAATTAAATGAAATACACCAATAAAATGAATTTCACCCATTTCTCT
GAATGTGACTGACTGATGATGCCACATATAGTTGACACCATGGCATCTCT
CCTGTTTATGGAGATGGGTAAAG

TCCTATGTCTTTGCGAAGCCTGTTGGACGCCTGTTCCCTCACTTTAGGTG
AACTATAGTTTTTCCGCGTAATTCAGGCGAGCCGTCAGGAAGGAAGTGAG
CTAGCTAGCAGGTGAGAATGCAGGCCCGCAATCGAGAGAGTAAGGGAGAG
AGCGAGCCAGTAAGTAAACAAGCTAGCTACCTGTACAGGGCAATAAGTCC
CTCTCTCTTGACAGGATGGAGAACATACATTCACTGGCTTGTCCCCGCAA
ATACCTGGTTGAGGCCAATCTTTGCTCATAATGATATTTACCCTATATAA
TACAGTATTTGTGTGAGTGGTAAATAATACATCGTAAGACCTCATAATTG
ATCACGTACATATGAAATGAACCCTCCCTGTGGTGCCTGGCCCCTGGCCG
CTACTCGTTTAGTGGCATAACGACATCCCTTTTCACCCTTCGATCAACTA
TCCCCCCTTTACCTAATCCCCTCTTTGGACTCCCCCTGGATCGCTCTTTT
CCCCCATTACCGCAGATCCCTCCGGTCTGTGTTTTTATACTTAACTACGC
TGTACCGATAGCGCGGTTTTTTATAGCACCCGCCTGTTTTCTAACCCCAT
ATATTACCCCTGTATACCACATATCCCCATTTATCTTGGTTTTCCCCTGG
TGGCCCACTGTCTCCTCACCGTTAACACCCGCATACTTTTCCGCCGGGTC
GTTATTTATCCCCCCTACTCCCTCTTTTTGTTATCCAACCGTCCCGGAAC
TCGTTGTTACATACTTATTATTTAAGTCCTGCCCTGAGCAACCTCGATCA
CGACACTTATATCANCTACATTGGGTTTCATATCACACCATTTGTGAATT
CCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_g09.b1 MSMg01no483_g09.b1 CHROMAT_FILE:
MSMg01no483_g09.b1 PHD_FILE: MSMg01no483_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:35 2005
         (343 letters)



>mm_chr3_35146615_35147358
          Length = 744

 Score =  627 bits (324), Expect = 0.0
 Identities = 340/346 (98%), Gaps = 3/346 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcaaggctt-ccctacacactgataatttatcttcattcaaaaccatcttcaaatatcc 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcaaggcttcccctacacactgataatttatcttcattcaaaaccatcttcaaatatcc 442

                                                                       
Query: 60  agagtaggggttgggaacgaccttaggcaataggcatttaaggtaaataaggaaaacatc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagtaggggttgggaacgaccttaggcaataggcatttaaggtaaataaggaaaacatc 382

                                                                       
Query: 120 tcccttccatctgatgttccactgcagattctgagacagcagttgccaatcatatgtgat 179
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 381 tcccttccatctgatgttccactgcagactctgagacagcagttgccaatcatatgtgac 322

                                                                       
Query: 180 tcctgagctcttgggaggtctgtataaggatgtattgaaacgtaagatgtgtactagact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgagctcttgggaggtctgtataaggatgtattgaaacgtaagatgtgtactagact 262

                                                                       
Query: 240 gtcaagacgtgatatatagaaatagtatgacatgcctcactcataatcttttcatggatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaagacgtgatatatagaaatagtatgacatgcctcactcataatcttttcatggatg 202

                                                         
Query: 300 catataaaaaca--aatattttattcatattaaattaaatgaaata 343
           ||||||||||||  ||||||||||| ||||||||||||||||||||
Sbjct: 201 catataaaaacacaaatattttatttatattaaattaaatgaaata 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 744
Length adjustment: 9
Effective length of query: 334
Effective length of database: 735
Effective search space:   245490
Effective search space used:   245490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |