Query= MSMg01no483_j01.b1 MSMg01no483_j01.b1 CHROMAT_FILE:
MSMg01no483_j01.b1 PHD_FILE: MSMg01no483_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:48 2005
(692 letters)
>mm_chr3_74347378_74348469
Length = 1092
Score = 1274 bits (659), Expect = 0.0
Identities = 680/687 (98%)
Strand = Plus / Minus
Query: 5 gaattcatctattccgtgttttgtcacattaattatcaactgctttgtatgtatgtatat 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gaattcatctattatgtgttttgtcacattaattatcaactgctttgtatgtatgtatat 832
Query: 65 ctttgtgcttcagctacttttgcttctttgtctatagatgaatttgcctcatatacatat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ctttgtgcttcagctacttttgcttctttgtctatagatgaatttgcctcatatacatat 772
Query: 125 cagatatcatatgtcacagaaatagaattaattcttagcatcttatctaaggtctatttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 cagatatcatatgtcacagaaatagaattaattcttagcatcttatctaaggtctatttt 712
Query: 185 atggttccattcctttagctgggggaagataactaatgttgctatctacacagtacctga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 atggttccattcctttagctgggggaagataactaatgttgctatctacacagtacctga 652
Query: 245 aagtgctcctgagcatttgagttggaaaggaaaccattataaagatatgtcatctgttta 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 651 aagtgctcctgagcatttgagttgaaaaggaaaccattataaagatatgtcatctgttta 592
Query: 305 agccattgtgtagaatcagtattaattatttccctcctattcatttagtcaattattagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agccattgtgtagaatcagtattaattatttccctcctattcatttagtcaattattagt 532
Query: 365 cataaacctaatttatctaaaacagtccatcagaatggatcttatcatgtagaagaggtg 424
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 531 cataaacctaatttatctaaaacagtccatcagaatggatcttatcatatagaagaggtg 472
Query: 425 tttaatactatagtaatccctactgagatacccagtgaatgaaacagttataaaaacaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tttaatactatagtaatccctactgagatacccagtgaatgaaacagttataaaaacaaa 412
Query: 485 tcaaaacaaataaaccgaaacagaagggcattcatttaacagagagaggtaaagatgaag 544
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 411 tcaaaacaaataaaccgaaacagaagggcattcatttaacagagagtggtaaagatgaag 352
Query: 545 aaaacaataaagtatctgcaattttcattaacaatttcaggggtaaattaaaattatcta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaaacaataaagtatctgcaattttcattaacaatttcaggggtaaattaaaattatcta 292
Query: 605 agaagaaatctccctgtcatagatatttttatatatggggacaaaagaaaacataaactt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agaagaaatctccctgtcatagatatttttatatatggggacaaaagaaaacataaactt 232
Query: 665 caaaaactgatgatagttggcaaacat 691
|||||||||||||| || |||||||||
Sbjct: 231 caaaaactgatgatcgtaggcaaacat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_j01.g1 MSMg01no483_j01.g1 CHROMAT_FILE:
MSMg01no483_j01.g1 PHD_FILE: MSMg01no483_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:49 2005
(663 letters)
>mm_chr3_74210835_74211898
Length = 1064
Score = 1056 bits (546), Expect = 0.0
Identities = 634/668 (94%), Gaps = 14/668 (2%)
Strand = Plus / Plus
Query: 1 agtaagtaatttacacataagtcaaagaagcaagattgtatacaattcttcttattataa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 204 agtaagtaatttacacataagtcaaagaagcaagattgtatacaa---ttcttattataa 260
Query: 61 aatattaaataaaagctaatgagttataataccctagcttcatttttatttgcattagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aatattaaataaaagctaatgagttataataccctagcttcatttttatttacattagag 320
Query: 121 taaagctccatacacacaaatgcactccat---aaatttttttttaaaaatccctaaaaa 177
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 321 taaagctccatacacacaaatgcactccataaaaaa----tttttaaaaatccctaaaaa 376
Query: 178 cccctggaacaatttaatcatctaatatatcacttaggtcaagtattaattttatatgtc 237
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cccctgaaacaatttaatcatctaatatatcacttaggtcaagtattaattttatatgtc 436
Query: 238 aacatattttacattgtgtagtattaactttggtaatgttattgtctattctaataatag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aacatattttacattgtgtagtattaactttggtaatgttattgtctattctaataatag 496
Query: 298 ctaaatagcaggagcatcatttgtgggtattttatgtgaaataatgaagggtccagcagc 357
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctaaataacaggagcatcatttgtgggtattttatgtgaaataatgaagggtccagcagc 556
Query: 358 acgagttaaattattaagaataggttgttattatactggagttcagtatctgaatataag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acgagttaaattattaagaataggttgttattatactggagttcagtatctgaatataag 616
Query: 418 tccaacga-gctcatgaatatattcaatgaatgttcccaattactcaagtttcagggggg 476
|||| ||| | |||||||||| ||||||| ||||||||||||||| |||||| ||||||
Sbjct: 617 tccagcgatg-tcatgaatatcttcaatgcatgttcccaattactaaagtttaaggggga 675
Query: 477 gaaaac-aaagtaagcacaaattatattaataaagagtttacagtgaattctccctgtat 535
||||| |||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 676 aaaaaccaaagtaagcacaaagtatattaatatagagtttacagtgagttctccctgtac 735
Query: 536 actctcttaatatgttaatgaatttaaaatgggcatttaaaacaaaa-acaaaatattat 594
| ||||||| || ||| |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 736 aatctcttattaggttgatgaatttaaaatgggcatttaaagcaaaacacaaaatattat 795
Query: 595 gctgtgtactagaaagacaatgcacctgagggtgggcttggatgatgagctgtgctaacc 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cctgtgtactagaaagacaatgcacctgagggtgggcttggatgatgagctgtgctaacc 855
Query: 655 tctcataa 662
||||||||
Sbjct: 856 tctcataa 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space: 688262
Effective search space used: 688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
