BAC Information

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BAC

Clone NameMSMg01-483N08
Chromosome3 (Build37)
Map Location 124,474,483 - 124,475,160
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483N08.T7 (MSMg01no483_n08.b1)MSMg01-483N08.TJ (MSMg01no483_n08.g1)
ACCAG563666AG563667
length7481,016
length of high quality
(start - end)		687 (52 - 738)---
definitionCHROMAT_FILE: MSMg01no483_n08.b1 PHD_FILE: MSMg01no483_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:11 2005CHROMAT_FILE: MSMg01no483_n08.g1 PHD_FILE: MSMg01no483_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGAGTACCCTCTGCAGTGTAAAAATTCCTGAAGAATGG
GAGGATTATTACTGAGCCTCTCAGGGTGAACTACTTATGCTCCATTTAGT
AGCCTTGTGTTTGCTTTACCAAGTAACACCCCAAAATCAGCAGCTCACAA
GTTAAATATGAATATATTCAGTACCCTTTTTGAATATAGTAAATATATTT
AACATATAATTATAAAAAATGAATGTGAATTATTTTATTTTAAATGCTTT
AACACAATCTAAAAAATGACTTGCTAGATATGCTTTAAAAGTAACTCAGT
TAAACATAACTTAAATATATGCATTAGAAAAATATTTTGAGCAGAATCAT
CAAATTCCACATAAAACACGATCATCCAGCCATGCTCACATAATTTAAGA
TTAAAAAGGCCATATAATACTACATTTCATATGGTGCTAATTTAAAAACC
AACTCTCATTCACAAAATATGTCTTCCTATTATTTATACAGTGCTATTTA
TATAAGTTGTTTTATTTATATAATATATATGATTTATGTAAAAATAGAAG
TTTTGTCTCAAAACAAGCATCAATTAGTAAGGTATAGCTATTTTTCTTCT
GGCAATGAGAACATTATTTACGTTGTCTAAATATATTTACAAACAAGATG
CTATTTTACAGTCTTGCTGGATGTTTGTGTTGCAGACATACACACACA

ACCTACTGATGATTGTGGGTGTGTGCGCGGGCGGGCGCGGATTTTCTCCC
CACATATTATTGAGACAAGTGCGGATTTTATCTGGCGGGAAGTATTTTAT
TGCGTTTCCGTACTTCCTCTTCACCGACACACCGGCCACACCACAAAAAC
CTTAATTTAGCGCAGCGCTATTTGTAACTTATCGCCACATTCGAGGAAGA
GGTGTGTCCGGTGGCGATTACTGGTAGTTACAACACTAGATTGTATCACT
CGTGACTTATTAGTAAGGAATTTATGGGCGGAAAAACCGCGTTTCGATGG
GCGCCCGTCTTCCCCTTTTTTTATTCTCTGCGCCCCTGAGTGGATACATT
ACAAGTTGAAAACACCCTCTGTGATTGATTACCTATTTTTCCTCCCTGTT
TCTTTTTTCCCCTCTATACTCGGTGCCATTTATAAATTTGTATCCCGGTC
GCACCCCCGGCCGTGCGCCGATTATAACCTATATTTATACCGTAATAGGC
CACTTGTCGAGAATTAGAGAGTTTTGAGTGAATAGAAATACAGCTATAGA
CACAATACGTAATAAACAATATATTCTTATCCTTTTGTCCTATCCCCTCT
CCACATAATGGCGCGTCTGGCGGCAATGTTATTTGTAGCGCTTACCGCTA
ATTGGTCGCAATACCGCTCTCACATTTTTACCCCCGGTATTTTTACGCCT
TATACCATTACGCGCCAGAACGAGAATTGCCCGTTATACGAGTATGCAAT
TTCTCTCTCACACACCCCGTTTTTTATACCACCGCCCGTATTCCACCATG
TTATATCTGCGTTTGCTTTGTATATGAGGCTGACAACATTAGTGTTATAT
AGTGGCGTATTTGCAGCCGCCTCCGCCTGGTATTTTGTGTACGCACTAAC
ACCATGAGGGATGAAGTGTCGTTTCGTGTGTGTCAGACGCTGGGGCAAGG
TAGGAAGCGTGCAAGCGGTAATGTGTGAAACGACCGTTCCCTTTTAATAG
TTATTTTTGATTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_n08.b1 MSMg01no483_n08.b1 CHROMAT_FILE:
MSMg01no483_n08.b1 PHD_FILE: MSMg01no483_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:11 2005
         (687 letters)



>mm_chr3_124474233_124475315
          Length = 1083

 Score = 1180 bits (610), Expect = 0.0
 Identities = 664/684 (97%), Gaps = 7/684 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagagtaccctctgcagtgtaaaaattcctgaagaatgggaggattattactga 64
           ||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||  |
Sbjct: 928 gaattccagagcatcctctccagtgtaaaaattcctgaagaatgggaagattattac-ca 870

                                                                       
Query: 65  gcctctcagggtgaactacttatgctccatttagtagccttgtgtttgctttaccaagta 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 869 gcctctcagggtgaactacttatgctccatttagtagccttatgtttgctttaccaagta 810

                                                                       
Query: 125 acaccccaaaatcagcagctcacaagttaaatatgaatatattcagtaccctttttgaat 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 809 acaccccaaaatcagcagctcacaagttaaatatgaatatattcagcaccctttttgaat 750

                                                                       
Query: 185 atagtaaatatatttaacatataattataaaaaatgaatgtgaattattttattttaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 atagtaaatatatttaacatataattataaaaaatgaatgtgaattattttattttaaat 690

                                                                       
Query: 245 gctttaacacaatctaaaaaatgacttgctagatatgctttaaaagtaactcagttaaac 304
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 689 gctttaacacaatctgaaaaattacttgctagatatgctttaaaagtaactcagttaaac 630

                                                                       
Query: 305 ataacttaaatatatgcattagaaaaatattttgagcagaatcatcaaattccacataaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ataacttaaatatatgcattagaaaaatattttgagcagaatcatcaaattccacataaa 570

                                                                       
Query: 365 acacgatcatccagccatgctcacataatttaagattaaaaa-ggccatataatactaca 423
           | | ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 569 atatgatcatccagccatgctcacataatttaaga-taaaaacggccatataatactaca 511

                                                                       
Query: 424 tttcatatggtgctaatttaaaaaccaactctcattcacaaaatatgtcttcctattatt 483
           |||||| |||||||||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 510 tttcatgtggtgctaatttaaaaaccaactctcattcacaaaatatgt----ctattatt 455

                                                                       
Query: 484 tatacagtgctatttatataagttgttttatttatataatatatatgatttatgtaaaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tatacagtgctatttatataagttgttttatttatataatatatatgatttatgtaaaaa 395

                                                                       
Query: 544 tagaagttttgtctcaaaacaagcatcaattagtaaggtatagctatttttcttctggca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tagaagttttgtctcaaaacaagcatcaattagtaaggtatagctatttttcttctggca 335

                                                                       
Query: 604 atgagaacattatttacgttgtctaaatatatttacaaacaagatgctattttacagtct 663
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atgagaacattatttacattgtctaaatatatttacaaacaagatgctattttacagtct 275

                                   
Query: 664 tgctggatgtttgtgttgcagaca 687
           ||||||||||||||||||||||||
Sbjct: 274 tgctggatgtttgtgttgcagaca 251


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1083
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1073
Effective search space:   726421
Effective search space used:   726421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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