BAC Information

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BAC

Clone NameMSMg01-483N17
Chromosome3 (Build37)
Map Location 69,221,514 - 69,221,900
singlet/doubletsinglet
Overlap genePpm1l
Upstream geneSchip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14
Downstream geneLOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483N17.T7 (MSMg01no483_n17.b1)MSMg01-483N17.TJ (MSMg01no483_n17.g1)
ACCAG563684AG563685
length770796
length of high quality
(start - end)		435 (326 - 760)548 (78 - 625)
definitionCHROMAT_FILE: MSMg01no483_n17.b1 PHD_FILE: MSMg01no483_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:13 2005CHROMAT_FILE: MSMg01no483_n17.g1 PHD_FILE: MSMg01no483_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGG
AATTCACTGGTTTCCAATACAAGCCAATTGGTGGGCTCCAGGTTCAGTGA
GAGGAATGAATAATGTGAAGAGTGATAGAAGACCCCCGAAATTGACCTTT
GATCTCAGGCATGCAAGCATTTGCACAAGACACACATGCACACACGCGCA
TACACACACACACACACACGCACACACAATTAAAGTATTAGGCTTATATA
TGAACATTGAACCAACTGCTGAGTACAAATTATAAAAATATCAATCTATA
GAGGCTGGGTTTCTGCTTTTTTTTAGAGTACTTGGCATGAACAAGACTCC
TGCTTCACTCTTTAGCAACACACACAAATAAATAAATTTAAACATTTTTT
CAAACTGCAGCAACATACTTGATAACTGTCTGCATGAGTGACCCATTCAC
AGCCCAGTAATTTTAGAGTCACACTTTTTGTAATGTGAGTGTCCATGCTG
CGTATGTGCTTGTGTGTGAGTTTGTGTGTGTGTGTGTGTAAGCCAGAGGA
AAACCTTAGATATTATTACACACACACACATCATATAGCTTTCTTTCTTT
TCCTTCTTTTTCTTTCTTTTTTTTCCCCCATAAAGTAAAACCGGGTTCTC
TCATTGTCCTGAAACCTGCAAATAGACCGGCCAGCAAGTGACACCTCCTT
CCACCGCCAAGAACCGGCTTGTCTCTATCTCTCCGGCAGCAGGATCACAA
GCGTACTCAAACACTGTCCC

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGACACTGGTACAATGCCCACTT
CTTCCCCCAAACTGAAAATCACCACTTACACGTCCAATGTGAGTCAGACA
CCTGTTGCCACTCCTGTAGAGAGATTTAATCTAGCAACATGGCTGCTCAC
TCTGGCTGGAATACAAACATAGCCTTAGCACACATCTCTATCCCCTCTTG
TTGGAATAGAAACGTGCCTTTAGTACAGACCTTTCATCCCAAGGAATGAA
GGAAGGTAACATTAGTTGGTAGAAGGAGGCAGCCAGTTTTCTACTCATTC
ATGAGTTCAGTACAGACTGGCAAAGACCGTTGAAGCCAGAGAATAAGAAG
GAGCAGGAAGATTAGAACCGATTTCTAGAGTTGAAACCAAACAGAGCCAT
TCAGTCAGGAGGTTAGAGAAGCCAGTTTGAATTAGCACAGAGAGGAGTTT
AAGCCAGAACAGCGGAGTCAAACCAGCCAGTCAGAGTTCAGAAAGAGCTA
GAAGGGGTAAGCTTATTCGGCAGTAAGTCTCAGAGACTGAAAACTTCTAG
AGCTAGATTAGATAGTACAGAGGCTAGAAGCTTCCATGACTTGGCCTAGG
TAAGCAGACAGAGGCAGTAAGCCTTGGAGACGACAATTTCATCANGAGAA
TAAAAGTGACTTTTACACACTTGGAACTCTTTTCACACTTGCTTGTGTGA
CTACAGTGTTGTGTGGCTACAGTGGCATGGCTCANTCAAAANGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_n17.b1 MSMg01no483_n17.b1 CHROMAT_FILE:
MSMg01no483_n17.b1 PHD_FILE: MSMg01no483_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:13 2005
         (435 letters)



>mm_chr3_69221514_69222348
          Length = 835

 Score =  704 bits (364), Expect = 0.0
 Identities = 383/390 (98%), Gaps = 3/390 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtacttggcatgaacaagactcctgcttcactctttagcaacacacacaaataaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gagtacttggcatgaacaagactcctgcttcactctttagcaacacacacaaataaataa 328

                                                                       
Query: 61  atttaaacattttttcaaactgcagcaacatacttgataactgtctgcatgagtgaccca 120
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 327 atttaaaaattttttcaaactgcagcaacatacttgataactgtctgcgtgagtgaccca 268

                                                                       
Query: 121 ttcacagcccagtaattttagagtcacactttttgtaatgtgagtgtccatgctgcgtat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 267 ttcacagcccagtaattttagagtcacactttttgtaatgtgagtgtccatgctgcgtgt 208

                                                                       
Query: 181 gtgcttgtgtgtgagtttgtgtgtgtgtgtgtgtaagccagaggaaaaccttagatatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gtgcttgtgtgtgagtttgtgtgtgtgtgtgtgtaagccagaggaaaaccttagatatta 148

                                                                       
Query: 241 ttacacacacacacatcatatagctttctttcttttccttctttttctttcttttttttc 300
           ||  ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 147 tt--acacacacacatcatatagctttctttcttttctttctttttctttc-tttttttc 91

                                                                       
Query: 301 ccccataaagtaaaaccgggttctctcattgtcctgaaacctgcaaatagaccggccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  ccccataaagtaaaaccgggttctctcattgtcctgaaacctgcaaatagaccggccagc 31

                                         
Query: 361 aagtgacacctccttccaccgccaagaacc 390
           ||||||||||||||||||||||||||||||
Sbjct: 30  aagtgacacctccttccaccgccaagaacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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