BAC Information

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BAC

Clone NameMSMg01-483P17
Chromosome3 (Build37)
Map Location 96,325,400 - 96,326,049
singlet/doubletsinglet
Overlap genenone
Upstream geneCtss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500
Downstream geneHfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483P17.T7 (MSMg01no483_p17.b1)MSMg01-483P17.TJ (MSMg01no483_p17.g1)
ACCAG563780AG563781
length767771
length of high quality
(start - end)		---648 (80 - 727)
definitionCHROMAT_FILE: MSMg01no483_p17.b1 PHD_FILE: MSMg01no483_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:23 2005CHROMAT_FILE: MSMg01no483_p17.g1 PHD_FILE: MSMg01no483_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGGCGCAACACTCCATCGAAAGGCCGAAGGCNGATTCTGACTGAACTCT
GAATCAACCTGCCAAATGAGGNGAAAAGATCGGCCCCTTCCAANNACCNG
GCGANAAAATCCCCCCCAAACTGGAAAACCAAAGGCCGGGGAAAACCGAG
CACATGGGGGGGCCCCCCAAAAAAAAAGGGGGGATTTTTTTTTCCCCGAG
CGCCCCAAAGGGGAAAAAAATTTGGGGCCCGGGGGAAACCCCCCCCCCTC
CTTAAAAAAAGGCCCCCCCCCCCCCCGCAAAAAAAAAAAANTTTTTTTTT
TTTTTGGGGGGGAAAAAGAGGGGGGGGCCCCGGGGCCCCCCTTTTATTTA
ANAAAAAAAAAACCCCCCCTTTTCTAAAAAAAAAAAAAAAAACCGGGGGG
GGGGCCCCCCCCCTCCCCCCTNTTNACCCCCCCCCCCCCCCCCTTTTCTT
CCCCCACACCCAAAAAAAAAAAAAACCACCCCCCGCCCCCCCCCCCACCC
CAAAAAAAAAAAAAAAAAAAAAAACCCCCCCCCCCCCCCCCCCCNCCNCC
CCCGACCAGTCGCGGACCCCGCGCACCCCCCTCTGATGATCTCTGGGAAG
AGAATGCACGACAACGTGTCCACACAACAAACAAACACCCGTCTCCGCAA
TATTCATTTTTTTAACCAACGCGCTACACACAACCCANTANCCCACAAAA
NACCTTCCCCCCCCCCCCTCCTTCNNCNNNTNNGGCGCCCACCNTTGGAG
GGGGTCGGTGGGGTGGG

NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGAGAAATAACCTATTCC
CATTTGGAGCCAGGAATTATCCAAGCTAAACAAGGAAGCTTTAAAATACT
GTATCAAGCTGGGCGTGGTGGCACATGCCTTTATTCTCAGCACTTAGGAG
GCAGAGGTCGATGCATCTCTATGAATTTCAGGCCAACCTAGCCTACATAA
GGAGTTCCAGACTAGCCAAGGCTACATAGTGAGGTCCTGTCTCAAATCAA
GCAAGCAAACAAAAAGATAGTTGTCGCTCTCCAAAGACAGGACAAATTAG
TTATCAAAATAGAAACTGAGTATATTGGGTTGACACACACCAAGTATTTT
AAGCCTCAATTCACAATTATACTTAAAAGTAAAAAGCATGGGGAGGAGTA
CTGGGGTGAGGAAGTGTTGGAAGGCAGACTGGGAGGAGGATAATGACTGG
ACTATAAAAAAAGATTAAATAATAAAGTAAAAGGTGATCGGCTAGTATTG
GAGAAAGCTGTTGTATCGTCCATTTTGAGAAGTGCTGGTAAATGGGAAAA
AATAGTTAATTATTTTTTTTTTGTTCTCAAATTTTCACTACTTTTATTTA
TGTATTTGTGGGTGGAAGTGAGTGTGTGTCACANTGCAGATGTGAAAGTC
ACAGGACAACTTTCAGGCCCTTCTACTATGTGGGTCCGGGGGATCCAACC
AATGCTGTTGGGCTTGGTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_p17.g1 MSMg01no483_p17.g1 CHROMAT_FILE:
MSMg01no483_p17.g1 PHD_FILE: MSMg01no483_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:23 2005
         (648 letters)



>mm_chr3_96325273_96326320
          Length = 1048

 Score = 1222 bits (632), Expect = 0.0
 Identities = 645/651 (99%), Gaps = 4/651 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggagaaataacctattcccatttggagccaggaattatccaagctaaacaaggaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tttggagaaataacctattcccatttggagccaggaattatccaagctaaacaaggaagc 718

                                                                       
Query: 61  tttaaaatactgtatcaagctgggcgtggtggcacatgcctttattctcagcacttagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tttaaaatactgtatcaagctgggcgtggtggcacatgcctttattctcagcacttagga 658

                                                                       
Query: 121 ggcagaggtcgatgcatctctatgaatttcaggccaacctagcctacataaggagttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ggcagaggtcgatgcatctctatgaatttcaggccaacctagcctacataaggagttcca 598

                                                                       
Query: 181 gactagccaaggctacatagtgaggtcctgtctcaaatcaagcaagcaaacaaaaagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gactagccaaggctacatagtgaggtcctgtctcaaatcaagcaagcaaacaaaaagata 538

                                                                       
Query: 241 gttgtcgctctccaaagacaggacaaattagttatcaaaatagaaactgagtatattggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gttgtcgctctccaaagacaggacaaattagttatcaaaatagaaactgagtatattggg 478

                                                                       
Query: 301 ttgacacacaccaagtattttaagcctcaattcacaattatacttaaaagtaaaaagcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttgacacacaccaagtattttaagcctcaattcacaattatacttaaaagtaaaaagcat 418

                                                                       
Query: 361 ggggaggagtactggggtgaggaagtgttggaaggcagactgggaggaggataatgactg 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 417 ggggaggagtactggggtgaggaactgttggaaggcagactgggaggaggataatgactg 358

                                                                       
Query: 421 gactataaaaaaagattaaataataaagtaaaaggtgatcggctagtattggagaaagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gactataaaaaaagattaaataataaagtaaaaggtgatcggctagtattggagaaagct 298

                                                                       
Query: 481 gttgtatcgtccattttgagaagtgctggtaaatgggaaaaaatagttaattattttttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 297 gttgtatcgtccattttgagaagtgctggtaaatgggaaaaaatagttaatta-tttttt 239

                                                                       
Query: 541 tttgttctcaaattttcactacttttatttatgtatttgtgggtgga---agtgagtgtg 597
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 238 tttgttctcaaattttcactacttttatttatgtatttgtgggtggagggagtgagtgtg 179

                                                              
Query: 598 tgtcacantgcagatgtgaaagtcacaggacaactttcaggcccttctact 648
           ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tgtcacagtgcagatgtgaaagtcacaggacaactttcaggcccttctact 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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