NACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATCTCTTGCGTTTACATGAAGGAATAGGTAGGAAAGGACCTC
ACAAAGTCACTCTCTGACCTCCATTATGGGCTCATATAAGCATATCATAT
ATTCATGTATACACACTCATGTACAGAAAAAATCAGATTAAATCTTGACT
GACTATTTAACACTGTAGGATGTAGATAATCACAATGCTTTTCAGAGTTA
ATCAATATTTTGTTTGATAATTGTCAGTGCTGAGAATACCACTTTGTATA
AATATGTAGGACAAAATAGCAGAAGTGTGTTCAGAAATTGCTAGAAGTTG
TATTCTAACCTGAAGTCAAAATTCATTTAATGGGACTCATCAGGAGCTCA
GCAGCAGTGTTAAAAATCAAATATTCTAACATGCTACAGCTAAAGAAACA
CCCGTTGGCTGTATGTGAGGGATGATGGGAGGTCACCGCAGCAGCCATCG
TTCCTCCAACTGAATCACTGTGTTTTCAGAAGAGCAGAGTTTTTAAACGG
ATAGCACGGTCTCTGTACTTCACAGTATAGTCATGAATTTGGTTCATGAT
GCTTCAGGGAGTGCATATTTGTAATCTGTGGCCAGAGAGCATGCTCAGTG
CAAAGTATCTGTGTTGTGTGTTCAGAACCAAGGCTGCAGTCTGGTATGAT
GCCATACTGGCCAGCCCTGACAGAAATATCCTGGGTTCTTTGTGTGTTGG
ATTTTAAATATTATT

NNNGGCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTTTAGATCTGTACCCC
ACTTTTTAAAGTGAGTAATTTGTTTTCTTGGTATCTAGTTTTTATTTCTT
TATGTATTTTGGACATTAGCCCTCTATCAGATGTAGAGTTGGCCAAAATA
TTTTCCCATTCTGTAGACTGCAGCTTTGTTTGAATCACAGTGTCCTTTGC
CGTTCAGAAGCCTCTCAGTGTCATAAGATCTCATTGATTAATTGTTGATC
TTAGTGCCTATGCTAACGGTGTTCTATTTACAAAGTCATTCCCTATACTC
ATGAGTTCAAAAATTTCCCCATTTTAGCTTCTATCAGGTTCAGAATATCT
GTTGTTTTGTTGTTGTTATTCAGTTGTTATTTGCTTGTTTGTTTTTTTTT
ATCAATTTGGAGCTGAGTTTTGTATGAGGTGATAAGTATGGATTTATTTG
AATTCTTCTACATGCAGCCATCCAGTGGACCAGCACCATTGTTATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATNTTGTGTGTGTCGTGCTTNTGTN
TANATGTATATATATATATATATATATATTTGTATATTTGTGTTGNNGNG
TGGGGTTTNTNNGNNNNTTTTNNTTGNTTTTNNGNGTGATTGATAGATGA
GAGTGAGGGGTTGGG

Query= MSMg01no484_a18.b1 MSMg01no484_a18.b1 CHROMAT_FILE:
MSMg01no484_a18.b1 PHD_FILE: MSMg01no484_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:28 2005
         (677 letters)



>mm_chr3_56152482_56153558
          Length = 1077

 Score = 1265 bits (654), Expect = 0.0
 Identities = 671/682 (98%), Gaps = 9/682 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatctcttgcgtttacatgaaggaataggtaggaaaggacctcacaaagtcact 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatctctggagtttacatgaaggaataggtaggaaaggacctcacaaagtcact 264

                                                                       
Query: 65  ctctgacctccattatgggctcatataagcatatcatatattcatgtatacacactcatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctgacctccattatgggctcatataagcatatcatatattcatgtatacacactcatg 324

                                                                       
Query: 125 tacagaaaaaatcagattaaatcttgactgactatttaacactgtaggatgtagataatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacagaaaaaatcagattaaatcttgactgactatttaacactgtaggatgtagataatc 384

                                                                       
Query: 185 acaatgcttttcagagttaatcaatattttgtttgataattgtcagtgctgagaatacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaatgcttttcagagttaatcaatattttgtttgataattgtcagtgctgagaatacca 444

                                                                       
Query: 245 ctttgtataaatatgtaggacaaaatagcagaagtgtgttcagaaattgctagaagttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttgtataaatatgtaggacaaaatagcagaagtgtgttcagaaattgctagaagttgt 504

                                                                       
Query: 305 attctaacctgaagtcaaaattcatttaatgggactcatcaggagctcagcagcagtgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attctaacctgaagtcaaaattcatttaatgggactcatcaggagctcagcagcagtgtt 564

                                                                       
Query: 365 aaaaatcaaatattctaacatgctacagctaaagaaacacccgttggctgtatgtgaggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaaatcaaatattctaacatgctacagctaaagaaacacccgttggctgtatgtgaggg 624

                                                                       
Query: 425 atgatgggaggtcaccgcagcagccatcgttcctccaactgaatcactgtgttttcagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgatgggaggtcaccgcagcagccatcgttcctccaactgaatcactgtgttttcagaa 684

                                                                       
Query: 485 gagcagagtttttaaacggatagcacggtctctgtacttcacagtatagtcatgaatttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagcagagtttttaaacggatagcacggtctctgtacttcacagtatagtcatgaatttg 744

                                                                       
Query: 545 gttcatgatg---------cttcagggagtgcatatttgtaatctgtggccagagagcat 595
           ||||||||||         |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttcatgatgttcatgatgcttcagggagtgcatatttgtaatctgtggccagagagcat 804

                                                                       
Query: 596 gctcagtgcaaagtatctgtgttgtgtgttcagaaccaaggctgcagtctggtatgatgc 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gctcagtgcaaagtatctgtgttgtgtgttcagaaccaaggctgcagtctggtatgatgc 864

                                 
Query: 656 catactggccagccctgacaga 677
           ||||||||||||||||||||||
Sbjct: 865 catactggccagccctgacaga 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)