Query= MSMg01no484_e18.b1 MSMg01no484_e18.b1 CHROMAT_FILE:
MSMg01no484_e18.b1 PHD_FILE: MSMg01no484_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:48 2005
(651 letters)
>mm_chr3_80530771_80531813
Length = 1043
Score = 1083 bits (560), Expect = 0.0
Identities = 623/648 (96%), Gaps = 10/648 (1%)
Strand = Plus / Minus
Query: 5 gaattcctgtttt-cccgctatgaagaccagtagattaatggaattaaatgcatattttt 63
|||||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 859 gaattcct-ttttgcaagctatgaagaccagtagattaatggaattaaatgc--attttt 803
Query: 64 ttttaccttagttactttcattttacagtgggttgatcactagttggcatctctgtacag 123
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 802 tttaaccttagttactttcattttacagtgggttgatcactagttggcacctctgtacag 743
Query: 124 tactacaccaaggccattcacctgcacctattttctgtgtcaatgacatagtaaagaaaa 183
|| ||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 742 ta------caaggtcattcacctgcacctattttctatgtcaatgacatagtaaagaaaa 689
Query: 184 tgtgccttaataatattcaaagacactaactataggcattactagagtaatctctcattc 243
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 688 tgtgccttaataatattcaaagacactaactatagccattattagagtaatctctcattc 629
Query: 244 aaagatgtaagcttatcttgcctctgattcatgaagtgatattagattcttggctacttt 303
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 628 aaagatgtaagcttatcttgcctctgattcatgaagtaaaattagattcttggctacttt 569
Query: 304 gatgcctaaagcaaaaagcattatttatctgaactattttttagctgcatcaaggataat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gatgcctaaagcaaaaagcattatttatctgaactattttttagctgcatcaaggataat 509
Query: 364 attatatttgctcattaatatcccctaatctttccataagctttatgcctgttatgtttt 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 attatattttctcattaatatcccctaatctttccataagctttatgcctgttatgtttt 449
Query: 424 taatactattgaattgtaattataacatgtcagaatttttatcaggtggttattttatta 483
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 taatactgttgaattgtaattataacatgtcagaatttttatcaggtggttattttatta 389
Query: 484 agacacaaatataggctgttagaaataaaattattgcttgttatgaattaaatgtagttg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 388 agacacaaatataggctgttagaaataaaattattgcttgttatgaattaaatatagttg 329
Query: 544 cttttatatttccccctcaaaatgtgtggtatattttctgtactgaataaaaaaggggag 603
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttttatgtttccccctcagaatgtgtggtatattttctgtactgaataaaaaaggggag 269
Query: 604 ttattttgatttagtggttgacttcttaatagataacattattaatca 651
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttattttgatttagtggttgacttcttaatagataacattattaatca 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1043
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1033
Effective search space: 662153
Effective search space used: 662153
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_e18.g1 MSMg01no484_e18.g1 CHROMAT_FILE:
MSMg01no484_e18.g1 PHD_FILE: MSMg01no484_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:48 2005
(671 letters)
>mm_chr3_80512927_80513997
Length = 1071
Score = 1282 bits (663), Expect = 0.0
Identities = 669/671 (99%)
Strand = Plus / Plus
Query: 1 tttccagataaacatacagtaagtgacacactgacaaatatgcagagtaaatatgcagag 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccaggtaaacatacagtaagtgacacactgacaaatatgcagagtaaatatgcagag 260
Query: 61 taaataaagctgtctggtgtggttactacccacaaacctaaacaccagctctccaacaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 taaataaagctgtctggtgtggttactacccacaaacctaaacaccagctctacaacaga 320
Query: 121 aagctttaactatggaaaaccagagttgactatgagtgcatagagtcacttaccaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctttaactatggaaaaccagagttgactatgagtgcatagagtcacttaccaatatt 380
Query: 181 gtggtgacaaccacagttttgttttcaagcccagatgtgtcatttccagaggggagctcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtgacaaccacagttttgttttcaagcccagatgtgtcatttccagaggggagctcg 440
Query: 241 gttagggtgacaaccattttatccacttcactccagtacccaatctgaaaaaagtgacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttagggtgacaaccattttatccacttcactccagtacccaatctgaaaaaagtgacag 500
Query: 301 ctgataaacacagagaaatgaaccatcttaatgtaataaactggatacttttcgaaccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgataaacacagagaaatgaaccatcttaatgtaataaactggatacttttcgaaccca 560
Query: 361 tgcctgtatccaaactaataccctcattaaccagaatcctaaataacagcaaaaaattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcctgtatccaaactaataccctcattaaccagaatcctaaataacagcaaaaaattta 620
Query: 421 cagtcataaacataatgtaattaggattgaaactgtatatatatcatcttctaaagtggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtcataaacataatgtaattaggattgaaactgtatatatatcatcttctaaagtggg 680
Query: 481 ttggatcttcatttttattatttgtttatttggttttgtttattcaaggtaagaacatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggatcttcatttttattatttgtttatttggttttgtttattcaaggtaagaacatgg 740
Query: 541 gatgaatctatgctggtttgtgtagaactcaacatgcattcaaatcacaatcctcctgcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgaatctatgctggtttgtgtagaactcaacatgcattcaaatcacaatcctcctgcc 800
Query: 601 cccggtctgtcattcatagattaaaggcataagcaagtacaactggctcacttttcacat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cccggtctgtcattcatagattaaaggcataagcaagtacaactggctcacttttcacat 860
Query: 661 tcctggataat 671
|||||||||||
Sbjct: 861 tcctggataat 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
