BAC Information

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BAC

Clone NameMSMg01-484F23
Chromosome3 (Build37)
Map Location 50,324,188 - 50,333,053
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
Downstream geneEG621304, LOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484F23.T7 (MSMg01no484_f23.b1)MSMg01-484F23.TJ (MSMg01no484_f23.g1)
ACCAG564077AG564078
length774775
length of high quality
(start - end)		638 (48 - 685)567 (75 - 641)
definitionCHROMAT_FILE: MSMg01no484_f23.b1 PHD_FILE: MSMg01no484_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:54 2005CHROMAT_FILE: MSMg01no484_f23.g1 PHD_FILE: MSMg01no484_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,332,421 - 50,333,053)(50,324,188 - 50,324,754)
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGGATTCAATTCATTTAAAGAGAACATTGCTGCAGACACTAATGTTCTTT
TGTGGCAGCTCTCCTCTGCCTGAGTTAGAATATTATGCTCCAGAGTTAAG
AAAGATGTGGCACAGATGTATTTATACGCACAAAATCAGTACTCTTTCCT
ACAGGGTAAGAGCCTTAAATATCAAGATATTCATTCCAATATGACTGGCA
TCAAAGTGCTGGTTTTGCAGTTTCTCAAATGAGGCCATAGAATCTTCAAC
TATCAACTATACTATCCTTAGTAAATGGACAATAAGAAGAATAATAAACC
ATGGTTCATTTTAGAAGTTAACCCACATCCAAATACCTGAATGACCTTCT
CTCAAAGCTGTTTTAAATAAATGGTGTATAAAATAGACACCAAGAGACTC
ATAAAGGGCCAAGGTGATATTTGAGGCCTTGTGGGAGGCACTCATTTCAG
ACATTCCATGCTCTGTCACCTCTAATGATCTTTGGCTCTTCATTTAGCTG
TGACTTGGCTTTGTAATGAACAAATGCCTTAACCAGACTAGATGGCATTC
TTATTATTGTCATATATTTTGAAAGTATGGTGGGGAAATAAATTGATATA
AGACAGTATAATACAAGTAAGGGAATCCCTGAGAGACCAGGGATATTTGT
GTCCCCATGGAACGATCATAAACTTTTTGGCTTCTGGTCATGACTGTCAG
TTGCTGAATTAAGGCTGATATGTN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTGAATTCAGAAGGAGTGAGGTCT
TCTGGGACATCTCATGAGCTATGAGATTGCTGACTGGTGCCTCAAGTCTT
ATATATGAATGCAGAATGTCCTGTGTACCATTTAAAATGGTGGCCAGTGT
TAAAGGAGTCCACAATTAAGATCTTTTACTCAAACAAATAAATCTAAGAC
ATCGTAATGCATTCTTACAATAAGATGAAAATTCAAATTTCTTTATGTTG
TTCTTCTAAAAGCCAATCTTTTCATTCCCTTTTCTTTGCAGTAAGCACAC
TGCCCTGCCCTGTAGAAATGTGTATTCCTGGATCAAGGCACATTTCTCCC
TTTAAAAGAAATGAAGGATGGTGTTTTCTAACACGGGTTGGTTTTTCCAA
TGGAAACATGAATAGAAATGGACTTGCTTTATTAAGGAGAAAAATGAGCT
CTCTGTGGTTCTCTGGAGAACATCCCAGACTGAAGTGTGGGAATCTGACA
GACACTCAAATTTTGTTGACAGGTCCAAGTCTGTACCCCCACTTCCTGCT
ACCTTCCCTGTGTTTCCAAGGTGTTTCTTCATGCCGTTGAACACAGCCTA
AATGCATCAGTTCATTTCATGCCCATGTGCCTTTGTTATCCACTCTCCCT
CTGCCTCAAATGCCNTGCCCTTGACATCCAGTGCCCTGTTTCCCANNGTA
CTGCCACACATACTTCTAGACCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_f23.b1 MSMg01no484_f23.b1 CHROMAT_FILE:
MSMg01no484_f23.b1 PHD_FILE: MSMg01no484_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:54 2005
         (638 letters)



>mm_chr3_50332216_50333253
          Length = 1038

 Score = 1224 bits (633), Expect = 0.0
 Identities = 633/633 (100%)
 Strand = Plus / Minus

                                                                       
Query: 6   gattcaattcatttaaagagaacattgctgcagacactaatgttcttttgtggcagctct 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gattcaattcatttaaagagaacattgctgcagacactaatgttcttttgtggcagctct 779

                                                                       
Query: 66  cctctgcctgagttagaatattatgctccagagttaagaaagatgtggcacagatgtatt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cctctgcctgagttagaatattatgctccagagttaagaaagatgtggcacagatgtatt 719

                                                                       
Query: 126 tatacgcacaaaatcagtactctttcctacagggtaagagccttaaatatcaagatattc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tatacgcacaaaatcagtactctttcctacagggtaagagccttaaatatcaagatattc 659

                                                                       
Query: 186 attccaatatgactggcatcaaagtgctggttttgcagtttctcaaatgaggccatagaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 attccaatatgactggcatcaaagtgctggttttgcagtttctcaaatgaggccatagaa 599

                                                                       
Query: 246 tcttcaactatcaactatactatccttagtaaatggacaataagaagaataataaaccat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcttcaactatcaactatactatccttagtaaatggacaataagaagaataataaaccat 539

                                                                       
Query: 306 ggttcattttagaagttaacccacatccaaatacctgaatgaccttctctcaaagctgtt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggttcattttagaagttaacccacatccaaatacctgaatgaccttctctcaaagctgtt 479

                                                                       
Query: 366 ttaaataaatggtgtataaaatagacaccaagagactcataaagggccaaggtgatattt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttaaataaatggtgtataaaatagacaccaagagactcataaagggccaaggtgatattt 419

                                                                       
Query: 426 gaggccttgtgggaggcactcatttcagacattccatgctctgtcacctctaatgatctt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaggccttgtgggaggcactcatttcagacattccatgctctgtcacctctaatgatctt 359

                                                                       
Query: 486 tggctcttcatttagctgtgacttggctttgtaatgaacaaatgccttaaccagactaga 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tggctcttcatttagctgtgacttggctttgtaatgaacaaatgccttaaccagactaga 299

                                                                       
Query: 546 tggcattcttattattgtcatatattttgaaagtatggtggggaaataaattgatataag 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tggcattcttattattgtcatatattttgaaagtatggtggggaaataaattgatataag 239

                                            
Query: 606 acagtataatacaagtaagggaatccctgagag 638
           |||||||||||||||||||||||||||||||||
Sbjct: 238 acagtataatacaagtaagggaatccctgagag 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no484_f23.g1 MSMg01no484_f23.g1 CHROMAT_FILE:
MSMg01no484_f23.g1 PHD_FILE: MSMg01no484_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:55 2005
         (567 letters)



>mm_chr3_50323988_50324954
          Length = 967

 Score = 1096 bits (567), Expect = 0.0
 Identities = 567/567 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgaattcagaaggagtgaggtcttctgggacatctcatgagctatgagattgctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgaattcagaaggagtgaggtcttctgggacatctcatgagctatgagattgctgac 260

                                                                       
Query: 61  tggtgcctcaagtcttatatatgaatgcagaatgtcctgtgtaccatttaaaatggtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtgcctcaagtcttatatatgaatgcagaatgtcctgtgtaccatttaaaatggtggc 320

                                                                       
Query: 121 cagtgttaaaggagtccacaattaagatcttttactcaaacaaataaatctaagacatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtgttaaaggagtccacaattaagatcttttactcaaacaaataaatctaagacatcg 380

                                                                       
Query: 181 taatgcattcttacaataagatgaaaattcaaatttctttatgttgttcttctaaaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatgcattcttacaataagatgaaaattcaaatttctttatgttgttcttctaaaagcc 440

                                                                       
Query: 241 aatcttttcattcccttttctttgcagtaagcacactgccctgccctgtagaaatgtgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcttttcattcccttttctttgcagtaagcacactgccctgccctgtagaaatgtgta 500

                                                                       
Query: 301 ttcctggatcaaggcacatttctccctttaaaagaaatgaaggatggtgttttctaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcctggatcaaggcacatttctccctttaaaagaaatgaaggatggtgttttctaacac 560

                                                                       
Query: 361 gggttggtttttccaatggaaacatgaatagaaatggacttgctttattaaggagaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggttggtttttccaatggaaacatgaatagaaatggacttgctttattaaggagaaaaa 620

                                                                       
Query: 421 tgagctctctgtggttctctggagaacatcccagactgaagtgtgggaatctgacagaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagctctctgtggttctctggagaacatcccagactgaagtgtgggaatctgacagaca 680

                                                                       
Query: 481 ctcaaattttgttgacaggtccaagtctgtacccccacttcctgctaccttccctgtgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcaaattttgttgacaggtccaagtctgtacccccacttcctgctaccttccctgtgtt 740

                                      
Query: 541 tccaaggtgtttcttcatgccgttgaa 567
           |||||||||||||||||||||||||||
Sbjct: 741 tccaaggtgtttcttcatgccgttgaa 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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