BAC Information

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BAC

Clone NameMSMg01-484G24
Chromosome3 (Build37)
Map Location 117,284,485 - 117,285,030
singlet/doubletsinglet
Overlap gene4833424O15Rik
Upstream geneLrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream geneEG668759, Snx7, LOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484G24.T7 (MSMg01no484_g24.b1)MSMg01-484G24.TJ (MSMg01no484_g24.g1)
ACCAG564125AG564126
length7851,587
length of high quality
(start - end)		595 (48 - 642)---
definitionCHROMAT_FILE: MSMg01no484_g24.b1 PHD_FILE: MSMg01no484_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:00 2005CHROMAT_FILE: MSMg01no484_g24.g1 PHD_FILE: MSMg01no484_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAGTCTTCACTTCTGCATGCATTAGCTCTCCAGGAGTTCAAT
GTGATTCGGGGTTATTTGGGTTATTTTTGTTTGTTTCTTTGTTGTTATTG
TTGTTGTTTTCCATTTTAGTTCAGATAAGATCTCACTAGGTATTCTGGAC
TGGCCTCCCACTCCCTATGTAGAACAGGCTGCCCTAGAACTCACAGATAT
CTGCCTGCTTTGGGGGGGGGGAATAACAGCATAAGTCACCCTGTCCCACT
GGAAATTATGAGGTTATATTTTAAAATCTCTGGTTTATGAAATAAGAAAA
TTTGGTCTAAGCAGCTGGCTAATTAGTAAGAGAAGCCAGACTAAGAGCAC
AGACTCATCTAACGGCTTTCTGTGGCACAGCACAGGTGTGGATTTCCAAG
GCAAGGCTTTCTAAAAGAAAGAACCCTGAGTAGAAAATTATTGTCTGTCA
TCATCTGCCTCCACTGCACTTGGAATGAAGCTGTGGGCACATTCCTCAAA
TCCAAGTCTCAGATGCTAGTGGTACCTTCCTAGAAATAGAATTCTAAAAC
ATTATCTGTGCATATCCCAACCTTCAAACCAGCCCTGCCCTGTGGCCACA
CTGGATATGGCAAATATGTTTCACATAAATCTAAAACAGGATACATCTTG
GTAGTCAGTAAGTCCAAATTCGGGGAAACAGGGTCATTCTAAACACTAGT
TCTTTTTAATAGTGAAAACCAAGTCACTTATTATN

CTTCGTCGCATAGTCTATAGAGAGATGACTAATAGGAGTAAGTATTACTT
GGCCGCGCGGACTATTCCTTGCCCTCCCTTCTTCTNTACAGAGGACATAT
GAGTGGTACTGAGCATAGATGGTGTAGACGTCTATTCTCCTCCCGCGCAA
GCTCACCTCTGAGGCGCTCAACTATGTACGACTGCCTGCGTGCTGATGTC
GNATATAAGTGCACGCGCACTACATGATGTGCTTCGGACGTCGCGATCAA
TCCCGCTAAACTTGTACGCAACAGTACTATCCTCCATATATGATGTATAT
CTCCTCTGTCTACCTCACTGCACTCAACTTTAGTGAATGAGCCNACTGTT
TCTCGAACTGATACCATGACCGGACCCGTCATGAGTGATGTCGTCGTGCG
ACGCGTCTNGAAGTGACAGTCTGCCGGCTAATGTCACCCTGCCACCGATT
CTGCGAGACGCCAGTTTCTCAACGCAGAGGACGTGTTCGCCGTGCACCGC
GTCTGTTGTGTCGCATCCGCACCCTGAAGGTAGTATGCTCTCGCGCTGTG
TCGCGTTGTGTGTAAGATTATCACTCTGTACCGCTCCAGATGTAGCTGTG
TCTGTGCTCGTAGTGTGATCAGATGGTTGACTGGGTGATACGCGGCGGGG
CCTGGCTAGCCTGCGCGAGCGGGTTGCGCCGCTCTACATTGTGGAGGTGT
GCGTGTAGAGGATCGTGGACCCCCATAGTGGTCTGTGTTGAGAGATACGT
TATGAGATCACCCTGTGTAGACCTTGGTCGGTGTACGTACTGATCTGTTG
TCCGTTAGTCATCGATCTTGCATTACTCTCTCTTTACGCTTCCTCGCACA
CTTATCGCGCAGCACCGATATGCGTGTTGCGTCTCTGCTCATCTGTAATA
TCTGCCATATCTTCATTACTGTGGCGCAGATTTAATAGCTGTCATCATTC
ATATTTATCGTGTTCCACTCGTATACACTTGACNCAGCCACTCTCTATAT
CTCTCGCTNACGCATATACATCTTCTCTCGTGNCTGTGTAGAGACCACAC
TATATCGATATATCTATCACGTCGTGTATATTATTCGTCGCACAGCGACT
TAAACTCTCATCTGTGTGGCTTACTACACATCCTACTAATNTAGCGCATA
TGGCTAATGGCACTCTCTGACGTATGTCGCACTGCTATCATTTTGCTCTG
TATCATTCACACGCACCGTACTATTTATCTTTAGCGCACCGCTCTACTGT
ACTTACTCTTTCATTCTCACACTACGCGAATCCATCTGACTCTGCTCGTC
ATTGTCTTATTACAACTTTATACTGCTATCTNCGCAATCATATACCTCTG
ATCANACCCTCATATATCTGTCTACACCGTCGCGAATATATTCCATACAC
GCATACTTACGCTCGCATCATTATATATAATGTTGTCTATGCGTCTATAC
ACCACGATGAGTATACAACTACTCCCAGTATACGACTCGCGGTGATTGCT
ATCTATATCATGCAGCACGATATCTGCAGAATACAGCGTATGTCTATTTC
TACACCATTATGTATCATCACTTCTTTTNTATGTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_g24.b1 MSMg01no484_g24.b1 CHROMAT_FILE:
MSMg01no484_g24.b1 PHD_FILE: MSMg01no484_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:00 2005
         (595 letters)



>mm_chr3_117284036_117285030
          Length = 995

 Score =  980 bits (507), Expect = 0.0
 Identities = 536/547 (97%), Gaps = 5/547 (0%)
 Strand = Plus / Minus

                                                                       
Query: 53  tgtgattcggggttatttgggttatttttgtttgtttctttgttgttattgttgttgttt 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 tgtgattcggggttatttgggttatttttgtttgtttctttgttgttattgttgttgttt 936

                                                                       
Query: 113 tccattttagttcagataagatctcactaggtattctggactggcctcccactccctatg 172
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 935 tccattttagttcagataagatctcactaggtattctagactggcctcccactccctatg 876

                                                                       
Query: 173 tagaacaggctgccctagaactcacagatatctgcctgcttt---ggggggggggaataa 229
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 875 tagaacaggctgccctagaactcacagatatctgcctgcttttggggggggggggaataa 816

                                                                       
Query: 230 cagcataagtcaccctgtcccactggaaattatgaggttatattttaaaatctctggttt 289
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 815 cagcataagtcaccctgtcccactggaaattatgaggttattttttaaaatctctggttt 756

                                                                       
Query: 290 atgaaataagaaaatttggtctaagcagctggctaattagtaagagaagccagactaaga 349
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 atgaaataggaaa-tttggtctaagcagctggctaattagtaagagaagccagactaaga 697

                                                                       
Query: 350 gcacagactcatctaacggctttctgtggcacagcacaggtgtggatttccaaggcaagg 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 696 gcacagactcatctaacggctttctgtggcacagcacaggtgtggatttccaaagcaagg 637

                                                                       
Query: 410 ctttctaaaagaaagaaccctgagtagaaaattattgtctgtcatcatctgcctccactg 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctttctaaaagaaagaaccctgagtagaaaattattgtctgtcatcatctgcctccactg 577

                                                                       
Query: 470 cacttggaatgaagctgtgggcacattcctcaaatccaagtctcagatgctagtggtacc 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cacttggaatgaagctgtgggcacattcctcaaatccaagtctcagatgctagtggtacc 517

                                                                       
Query: 530 ttcctagaaatagaattctaaaacattatctgtgcatatcccaaccttcaaaccagccct 589
           ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 516 ttcctagaaatagaattctgaaacattaactgtgcatatcccaaccttcaaaccagccct 457

                  
Query: 590 gc-cctg 595
           || ||||
Sbjct: 456 gctcctg 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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