Query= MSMg01no484_i10.b1 MSMg01no484_i10.b1 CHROMAT_FILE:
MSMg01no484_i10.b1 PHD_FILE: MSMg01no484_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:07 2005
(539 letters)
>mm_chr3_24697620_24698558
Length = 939
Score = 922 bits (477), Expect = 0.0
Identities = 516/537 (96%), Gaps = 15/537 (2%)
Strand = Plus / Plus
Query: 5 atcttcctgtttctaatcctatagccctggggttatagatattagccaccatgtctgata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atcttcctgtttctaatcctatagccctggggttatagatattagccaccatgtctgata 275
Query: 65 tttacatgggtattgagcatccaagctcatga--ataacaaatttatactcataaagcaa 122
|||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 276 tttacatgggtatt-----t--------atgagtataacaaatttatactcataaagcaa 322
Query: 123 gcactctattaactgatccatatccctcgagcccctagtatatttcttaataagactagt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcactctattaactgatccatatccctcgagcccctagtatatttcttaataagactagt 382
Query: 183 ataaaccaagcttcttgatctacagatttcaatactaatgctatgctagtaggtataaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ataaaccaagcttcttgatctacagatttcaatactaatgctatgctagtaggtataaaa 442
Query: 243 ttagtattaacagtttcttacatccaaatcagagctcccatgtcagagtttctccatcaa 302
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 443 atagtattaactgtttcttacatccaaatcagagctcccgtgtcagagtttctccatcaa 502
Query: 303 cttcattctctacagaagattggaattcttactagctctgttggaaacaaggatgctttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cttcattctctacagaagattggaattcttactagctctgttggaaacaaggatgctttt 562
Query: 363 agctaagatttcctactccattggtaaagaagagttggtagatttagtacaattcttaat 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 563 agctaagatttcctactccattggtaaagaagagttggtagatttagtacaattctcaat 622
Query: 423 ggcaccgtggtttcacaatctgaaggttattagctttcccatcccttaataagaacattg 482
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggcaccgtggtttcagaatctgaaggttattagctttcccatcccttaataagaacattg 682
Query: 483 gtagtcttctcaatattttaaggagtaactgacttatcctgttcagctctaggaatt 539
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 683 gtagtcttctcaatattttaaggagtaactgacttatcttgttcagctctaggaatt 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_i10.g1 MSMg01no484_i10.g1 CHROMAT_FILE:
MSMg01no484_i10.g1 PHD_FILE: MSMg01no484_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:07 2005
(596 letters)
>mm_chr3_24726087_24727082
Length = 996
Score = 920 bits (476), Expect = 0.0
Identities = 488/492 (99%)
Strand = Plus / Minus
Query: 105 attatgggatggatccccgggtggggtagtctttggatggtccatcctttcatcttagct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 attatgggatggatccccgggtggggtagtctttggatggtccatcctttcatcttagct 937
Query: 165 ccaaactttggctctgtaacccctttcatgggtattttgttccctatcctaaagaggaat 224
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 936 ccaaactttggctctgtaactcctttcatgggtattttgttccctatcctaaagaggaat 877
Query: 225 gaagtatccacatattgtcttccttcttcttgattttcttgtgttttgcaaattgtatct 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gaagtatccacatattgtcttccttcttcttgattttcttgtgttttgcaaattgtatct 817
Query: 285 tgggtattctgagtttctggcagagatcttaagaattgaaggaaatgtgtgatgtgggaa 344
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tgggtattccgagtttctggcagagatcttaagaattgaaggaaatgtgtgatgtgggaa 757
Query: 345 gaaggctatccccatttcacagagaacaaaactgaaaactcccagttgtagagacattaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 756 gaaggctatccccatttcacagagaacaaaactgaaaactcccagttgtagagacatcaa 697
Query: 405 tgtcttatgtgaaatttgaaggtaagattgacagatgtcagacagctgggcttccactga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tgtcttatgtgaaatttgaaggtaagattgacagatgtcagacagctgggcttccactga 637
Query: 465 atttctttgcatttgagatccttctgtgttgaaacaatattttctgaaagacatttcatt 524
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 atttcttttcatttgagatccttctgtgttgaaacaatattttctgaaagacatttcatt 577
Query: 525 taagcatgtgtatgcaaagacttttcattggattgacaattgtaatttacatacttgttt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 taagcatgtgtatgcaaagacttttcattggattgacaattgtaatttacatacttgttt 517
Query: 585 tattctgtatta 596
||||||||||||
Sbjct: 516 tattctgtatta 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
