BAC Information

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BAC

Clone NameMSMg01-484K20
Chromosome3 (Build37)
Map Location 48,688,108 - 48,813,292
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
Downstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484K20.T7 (MSMg01no484_k20.b1)MSMg01-484K20.TJ (MSMg01no484_k20.g1)
ACCAG564306AG564307
length739763
length of high quality
(start - end)		633 (74 - 706)690 (74 - 763)
definitionCHROMAT_FILE: MSMg01no484_k20.b1 PHD_FILE: MSMg01no484_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:20 2005CHROMAT_FILE: MSMg01no484_k20.g1 PHD_FILE: MSMg01no484_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,688,108 - 48,688,740)(48,812,603 - 48,813,292)
sequence
NAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGGGGGNG
CGGAATTCCACTTTTGTCTACAATTATTTTGAGGCTTTTATTTTGTGATA
TACTCCCATTTCTCTCTGTGTACTTGAGGAAATGGAAATTCCATATTAAG
TTATCTGAGGTGAGACTTTTTAAATTTCTTAGCCTCCATTCCTTTACCTT
CTCACTCTTCTTGCTTTTTGTAATCAGGTATCTTTCAGGGTTTTTTTTTT
TTTTCACAATAGGCACAGAATTCAAACAACTCTCAGAGTCCTCACACACC
AAACTCCACTGTCTAAACCATATTTACATTTGGTGAAAAATACAAGTCGC
ACAGAACCCATTTTCTTCTATTTTCCCTTGCCTCACTAATTTTTACTTCC
AGATGGGCAAATAGCATAAGGAAATATTGATATAAAATAAAGAAGGGTTG
AATGACATAAATGGAAAAGAAAGATTACCCAGTTATCTGGAGATTGATTT
TCTTAGGAACTCAAGAGAGTATTGAATCATTTTTGTGAAAGATGTATGGC
TGTCAGCCTCACCAGGGGATACTTTGAGATCCATGAGCTTTGTCTGTGGT
TTATGCAATTATTGGTTCACCGACAATTTTTATGGGGTAATGTTGTAGGC
AGAGCAATAGTATGTGTATGTGTATTTATGTATGCATGTATGTATGTATG
TATGTATGTATGCATGCACTGCATGTATGCACCCCCCCN

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGACATTTGCTTGCCAGATGGGAAG
ACAAATGTCTTCAGAATGGAGGGTGTCTTTATAGTCATGCTTAAGCAATG
AAAGTCAGTGGCTTGTTTAAAGAAATTAAAAAGGAAGAGCCCCTACTCAC
AAGAAACCAAATGGGTATTTAAAACTGGAGCCCGCAATGCTGAATCTGTG
GGGAGGGAATTAAAGGCTTGGCAAGCAAAGGGCTCCCTTTTTGGACATTT
CCTATTTAATATTTTAATGTAAAACCAGTCTTAAGCCAGTATCTGCAAAT
TCAGGGGAGTTTGTACCTATCCACATAATGATCTCTCCTCACTCATATGG
GATGGGAAATGATGAATGGAATGCGACTTATTACATGGATATTCCGCTCT
TTCTTACCCTCCTTATACTTGCAATTGGTGCCTCTGAGAATCATTCGGGC
TATTCTTCAACAATTCACTCCTATACATAATAGACTATTTTACTCTCATG
GCTAGCACAATAAAATTCAACATGATGTATAGTCAATAAGATGTATTTAG
GATTGAATAAGGCTATTTAATGGATAATGCTGACCATTACTTCACTGCAT
TTAAAAGGCCCAAAGCACAGAAATCCTTGCAAAATTAATGTCTCAATTTT
ATATTTTATTTTACTCTTATTTTTATGAAGTCAATAATCCCTAACTTATT
ACTGACAAGACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_k20.b1 MSMg01no484_k20.b1 CHROMAT_FILE:
MSMg01no484_k20.b1 PHD_FILE: MSMg01no484_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:20 2005
         (633 letters)



>mm_chr3_48687908_48688940
          Length = 1033

 Score = 1201 bits (621), Expect = 0.0
 Identities = 630/633 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattttgaggcttttattttgtgatatactcccatttctctctgtgtacttgaggaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattttgaggcttttattttgtgatatactcccatttctctctgtgtacttgaggaaat 260

                                                                       
Query: 61  ggaaattccatattaagttatctgaggtgagactttttaaatttcttagcctccattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaattccatattaagttatctgaggtgagactttttaaatttcttagcctccattcct 320

                                                                       
Query: 121 ttaccttctcactcttcttgctttttgtaatcaggtatctttcagggttttttttttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaccttctcactcttcttgctttttgtaatcaggtatctttcagggttttttttttttt 380

                                                                       
Query: 181 tcacaataggcacagaattcaaacaactctcagagtcctcacacaccaaactccactgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacaataggcacagaattcaaacaactctcagagtcctcacacaccaaactccactgtc 440

                                                                       
Query: 241 taaaccatatttacatttggtgaaaaatacaagtcgcacagaacccattttcttctattt 300
           ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaccagaaatacatttggtgaaaaatacaagtcgcacagaacccattttcttctattt 500

                                                                       
Query: 301 tcccttgcctcactaatttttacttccagatgggcaaatagcataaggaaatattgatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccttgcctcactaatttttacttccagatgggcaaatagcataaggaaatattgatat 560

                                                                       
Query: 361 aaaataaagaagggttgaatgacataaatggaaaagaaagattacccagttatctggaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaataaagaagggttgaatgacataaatggaaaagaaagattacccagttatctggaga 620

                                                                       
Query: 421 ttgattttcttaggaactcaagagagtattgaatcatttttgtgaaagatgtatggctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgattttcttaggaactcaagagagtattgaatcatttttgtgaaagatgtatggctgt 680

                                                                       
Query: 481 cagcctcaccaggggatactttgagatccatgagctttgtctgtggtttatgcaattatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcctcaccaggggatactttgagatccatgagctttgtctgtggtttatgcaattatt 740

                                                                       
Query: 541 ggttcaccgacaatttttatggggtaatgttgtaggcagagcaatagtatgtgtatgtgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggttcaccgacaatttttatggggtaatgttgtaggcagagcaatagtatgtgtatgtgt 800

                                            
Query: 601 atttatgtatgcatgtatgtatgtatgtatgta 633
           |||||||||||||||||||||||||||||||||
Sbjct: 801 atttatgtatgcatgtatgtatgtatgtatgta 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no484_k20.g1 MSMg01no484_k20.g1 CHROMAT_FILE:
MSMg01no484_k20.g1 PHD_FILE: MSMg01no484_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:20 2005
         (690 letters)



>mm_chr3_48812403_48813492
          Length = 1090

 Score = 1334 bits (690), Expect = 0.0
 Identities = 690/690 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagacatttgcttgccagatgggaagacaaatgtcttcagaatggagggtgtctttata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 agagacatttgcttgccagatgggaagacaaatgtcttcagaatggagggtgtctttata 831

                                                                       
Query: 61  gtcatgcttaagcaatgaaagtcagtggcttgtttaaagaaattaaaaaggaagagcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gtcatgcttaagcaatgaaagtcagtggcttgtttaaagaaattaaaaaggaagagcccc 771

                                                                       
Query: 121 tactcacaagaaaccaaatgggtatttaaaactggagcccgcaatgctgaatctgtgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tactcacaagaaaccaaatgggtatttaaaactggagcccgcaatgctgaatctgtgggg 711

                                                                       
Query: 181 agggaattaaaggcttggcaagcaaagggctccctttttggacatttcctatttaatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 agggaattaaaggcttggcaagcaaagggctccctttttggacatttcctatttaatatt 651

                                                                       
Query: 241 ttaatgtaaaaccagtcttaagccagtatctgcaaattcaggggagtttgtacctatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttaatgtaaaaccagtcttaagccagtatctgcaaattcaggggagtttgtacctatcca 591

                                                                       
Query: 301 cataatgatctctcctcactcatatgggatgggaaatgatgaatggaatgcgacttatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cataatgatctctcctcactcatatgggatgggaaatgatgaatggaatgcgacttatta 531

                                                                       
Query: 361 catggatattccgctctttcttaccctccttatacttgcaattggtgcctctgagaatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 catggatattccgctctttcttaccctccttatacttgcaattggtgcctctgagaatca 471

                                                                       
Query: 421 ttcgggctattcttcaacaattcactcctatacataatagactattttactctcatggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttcgggctattcttcaacaattcactcctatacataatagactattttactctcatggct 411

                                                                       
Query: 481 agcacaataaaattcaacatgatgtatagtcaataagatgtatttaggattgaataaggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agcacaataaaattcaacatgatgtatagtcaataagatgtatttaggattgaataaggc 351

                                                                       
Query: 541 tatttaatggataatgctgaccattacttcactgcatttaaaaggcccaaagcacagaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tatttaatggataatgctgaccattacttcactgcatttaaaaggcccaaagcacagaaa 291

                                                                       
Query: 601 tccttgcaaaattaatgtctcaattttatattttattttactcttatttttatgaagtca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tccttgcaaaattaatgtctcaattttatattttattttactcttatttttatgaagtca 231

                                         
Query: 661 ataatccctaacttattactgacaagacct 690
           ||||||||||||||||||||||||||||||
Sbjct: 230 ataatccctaacttattactgacaagacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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