Query= MSMg01no484_l03.b1 MSMg01no484_l03.b1 CHROMAT_FILE:
MSMg01no484_l03.b1 PHD_FILE: MSMg01no484_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:21 2005
(428 letters)
>mm_chr3_144746960_144747787
Length = 828
Score = 748 bits (387), Expect = 0.0
Identities = 417/435 (95%), Gaps = 14/435 (3%)
Strand = Plus / Minus
Query: 1 cagtaaaggtttactgaggtctagtactctgcagtgagcctgagaacacacccatgaact 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 cagtaaaggtttactgaggtctagtactctgcagtgagcctgagaaaacacccatgaact 382
Query: 61 gacagtcaaactccttatggcagaatgcctcatagttacatcagctgtcattcaaagtga 120
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagccaaactccttatggccgaatgcctcatagttacatcagctgtcattcaaagtga 322
Query: 121 gcaaagcacatctcccactacctcccaccagcactttcttgtagacacagtttgtcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaagcacatctcccactacctcccaccagcactttcttgtagacacagtttgtcagag 262
Query: 181 aagatttactctgttctttttatgtatctgtcttaatagttgacattcaaattatgtatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatttactctgttctttttatgtatctgtcttaatagttgacattcaaattatgta-- 204
Query: 241 tttttttt-------tctaaagttcttcattccagataaatttacttctaatggaatgac 293
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 -----tttcaggaggtctaaagttcttcattccagataaatttacttctaatggaatgac 149
Query: 294 tgaagctttcattcgaatctcttctggaacaggagacattttccagcaaagcttacaggt 353
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tgaagctttcgttcgaatctcttctggaacaggagacattttccagcaaagcttacaggt 89
Query: 354 cagaatgtcagtgtttctatatagatggagagtggaccagattggctgcactatctgcat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 cagaatgtcagtgtttctatatagatggagagtggaccagattggctgcactatctgcat 29
Query: 414 tattattattctttg 428
|||||||||||||||
Sbjct: 28 tattattattctttg 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_l03.g1 MSMg01no484_l03.g1 CHROMAT_FILE:
MSMg01no484_l03.g1 PHD_FILE: MSMg01no484_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:21 2005
(658 letters)
>mm_chr3_144671256_144672316
Length = 1061
Score = 1185 bits (613), Expect = 0.0
Identities = 648/661 (98%), Gaps = 3/661 (0%)
Strand = Plus / Plus
Query: 1 atctctgctatttgaagatatgacagtatctctttgccagtaatggagagatagtagtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctctgctatttgaagatatgacagtatctctttgccagtaatggagagatagtagtac 260
Query: 61 ctaaaaagtgtggtgaacataaaaatgaagatgtctgcctgtgcatacattttgaggagg 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ctaaaaagtgtggtgaacataaaaatgaagatgtctgcctgtgcatactttttgaggagg 320
Query: 121 ttgtggacttgactgttatatttcttcccttagtttggaagggataaagttccgtgtagt 180
|||||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||
Sbjct: 321 ttgtggacttgactgttatatttcttcctttagtttggaacggataacgttctgtgtagt 380
Query: 181 ctctaatcctgttgagttcaaagcactaatgcactttagctctgtggaggctaaggctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 atctaatcctgttgagttcaaagcactaatgcactttagctctgtggaggctaaggttgg 440
Query: 241 gcccttcctcacgtttctcagcattttgagatatgacatacatgagcatgcagagagcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcccttcctcacgtttctcagcattttgagatatgacatacatgagcatgcagagagcac 500
Query: 301 tttggtccccagtgctaggttccttgctgccaactgcctgcactacagttcctgttagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttggtccccagtgctaggttccttgctgccaactgcctgcactacagttcctgttagcc 560
Query: 361 atcccacagtggtggtgtcttagaaga---tctaagttcaagtttcttgaatggttacct 417
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 atcccacagtggtggtatcttagaagaagatctaagttcaagtttcttgaatggttacct 620
Query: 418 gctccgttatccagtaattccagggttactgtttttccattcacagattcaatcaaggct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctccgttatccagtaattccagggttactgtttttccattcacagattcaatcaaggct 680
Query: 478 gtgacgctggccctgagaataggcgaggctccttggcgaatgcttgcatacactgttaca 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgacgctggccctgagaataggcgaggctccttggcgaatgcttgcatacactgttaca 740
Query: 538 gggttggggaatttccctgtgttcttattcactaccggggtcactgtaataggaggtagt 597
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 gggctggggaatttccctgtgttcttattcactaccggggtcactgtaataggaggcagt 800
Query: 598 gtagcacttgctgcacgggaggtgacagtcaaggtgagagtctgtgagctcgcttgaatg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtagcacttgctgcacgggaggtgacagtcaaggtgagagtctgtgagctcgcttgaatg 860
Query: 658 c 658
|
Sbjct: 861 c 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1061
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1051
Effective search space: 681048
Effective search space used: 681048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
