BAC Information

Click to search

BAC

Clone NameMSMg01-484P11
Chromosome3 (Build37)
Map Location 15,942,859 - 15,943,432
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634323, LOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484
Downstream geneYthdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484P11.T7 (MSMg01no484_p11.b1)MSMg01-484P11.TJ (MSMg01no484_p11.g1)
ACCAG564524AG564525
length749742
length of high quality
(start - end)
569 (78 - 646)613 (76 - 688)
definitionCHROMAT_FILE: MSMg01no484_p11.b1 PHD_FILE: MSMg01no484_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:43 2005CHROMAT_FILE: MSMg01no484_p11.g1 PHD_FILE: MSMg01no484_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NACTTATAATTTGCGGCCGCTAAACGACCACCATACATACACGGGCCGNG
GAANNCAAGGCTTACTACTACCACGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTATATGGCGAGAAGCTGGAAGCAATCCCACTAAAA
TTAGGGACTAGGCAAGGCTGCCCACTTTCTCTCTACCTCTTCAACATAGT
ACTTGAAGTCCTAGCCAGAGCAATTTGACAACAAAAGGAGATCAAGGGGA
TATAAATTGGAAAAGAAGAAGTCAAAATATCACTTTTTGCAGATAATATG
ATAGTATATATAAGTTANCTAAAAATTCCACCAGAGAACTCCTAAACCTG
ATAAACAGCTTCAGTGAAGTAGCTGGATATGAAATTAACTCGAACAAGTC
AATGGACTTTCTGTACACAAAGAATAAACAAGCTGAGAAAGAAATTGGGG
AAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGTGTG
ACTCTAACTAAGGAAGTGAAAGATCTGTATGACAAGAACTTCAAGTCTCT
GAAGAAAGAAATTAAAGAAGTTCTCAGAAGATGGAAAGATCTCCCATGCT
CATGGATTGGCAGGATCAGCATTGTAAAAATGGCTATCTTGCCAAAAGCA
ATCTACTGATTCAATGCAATCCCCATCAAATTTCCAACTCAATTTTTCAG
CAAATTAAAAAGAACAATCTGCAAATTCATCTGGAATAACAAAAAATCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTTGAATTTTGGAATGGTGGG
GAGGAGGCTATGCAGTCAAGTATTTGCTGACTCACCACTAAGGCAAGACC
CTCTGAGCCATAAAGAGAAACAAATGAAAAGGAGAAACTGAAGCCAGAGG
GAGGGACTATCCAAGAAATAGCTGATGTGGCAAGGAAAGGGGAGATGCTT
CCAGAAAAGAGAATGTAGCAGGTGCATAGGTGCCAGTCTTCAGGAAGGAG
AATGTACTAGGTGTGTGTGCTGTAGAGACAGCACCAGCTCACACAGCCTG
AGGCTTTCATAGAGGATGGAGGGTGGGATGCGAGTAGCAAAATATGAGTG
GTATAAAATCTTCTGTTGCCTTTTTTCGTATTGTGGCTGACCAGAACTAA
GTGTAAATAAGTCGATTAAAAAGAAATATAAGAGCCCTGATAGAATCCAC
AGCAGGTAAGGACACTTAAGCATGCTAGCCTGATGACACAAGTTTGATGC
TAGAACTTGCATGGTGGGTCAAGTCCATGAGTTTGTGCTCTGACCTCTAT
ACGCATGCTGTAATATACAGAGTCATCATGCACAGACAACAATAATAACA
TTTTAGAATGTGAAATTCAATGATGGCTTCTCATTGTCACAAATAAGAAT
TACCTTTATCAAAACAAAAAAAAAATAGTGTTTAGTGCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_p11.g1 MSMg01no484_p11.g1 CHROMAT_FILE:
MSMg01no484_p11.g1 PHD_FILE: MSMg01no484_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:43 2005
         (613 letters)



>mm_chr3_15942627_15943639
          Length = 1013

 Score =  949 bits (491), Expect = 0.0
 Identities = 564/613 (92%), Gaps = 39/613 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttttgaattttggaatggtggggaggaggctatgcagtcaagtatttgctgactcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cagttttgaattttggaatggtggggaggaggctatgcagtcaagtatttgctgactcac 747

                                                                       
Query: 61  cactaaggcaagaccctctgagccataaagagaaacaaatgaaaaggagaaactgaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cactaaggcaagaccctctgagccataaagagaaacaaatgaaaaggagaaactgaagcc 687

                                                                       
Query: 121 agagggagggactatccaagaaatagctgatgtggcaaggaaaggggagatgcttccaga 180
           ||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||
Sbjct: 686 agagggagggactgtccaagaaaaagctgatatggcaaggaagggggagatgcttccaga 627

                                                                       
Query: 181 aaagagaatgtagcaggtgcataggtgccagtcttcaggaaggagaatgtactaggtgtg 240
           |||||||||                                     |||  |||||||||
Sbjct: 626 aaagagaat-------------------------------------atg--ctaggtgtg 606

                                                                       
Query: 241 tgtgctgtagagacagcaccagctcacacagcctgaggctttcatagaggatggagggtg 300
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 605 tgtgctgtagagacagcaccaggtcatacagcctgaggctttcatagaggatggagggtg 546

                                                                       
Query: 301 ggatgcgagtagcaaaatatgagtggtataaaatcttctgttgccttttttcgtattgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ggatgcgagtagcaaaatatgagtggtataaaatcttctgttgccttttttcgtattgtg 486

                                                                       
Query: 361 gctgaccagaactaagtgtaaataagtcgattaaaaagaaatataagagccctgatagaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 485 gctgaccagaactaagtgtaaataagtcgattaaaaagaaatataagagccctggtagaa 426

                                                                       
Query: 421 tccacagcaggtaaggacacttaagcatgctagcctgatgacacaagtttgatgctagaa 480
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tccgcagtaggtaaggacacttaagcatgctagcctgatgacacaagtttgatgctagaa 366

                                                                       
Query: 481 cttgcatggtgggtcaagtccatgagtttgtgctctgacctctatacgcatgctgtaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 365 cttgcatggtgggtcaagtccatgagtttgtgctctgacctctatacgcatgctgcaata 306

                                                                       
Query: 541 tacagagtcatcatgcacagacaacaataataacattttagaatgtgaaattcaatgatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tacagagtcatcatgcacagacaacaataataacattttagaatgtgaaattcaatgatg 246

                        
Query: 601 gcttctcattgtc 613
           |||||||||||||
Sbjct: 245 gcttctcattgtc 233


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)