Query= MSMg01no485_e15.b1 MSMg01no485_e15.b1 CHROMAT_FILE:
MSMg01no485_e15.b1 PHD_FILE: MSMg01no485_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:11 2005
(611 letters)
>mm_chr3_30085653_30086664
Length = 1012
Score = 1036 bits (536), Expect = 0.0
Identities = 591/616 (95%), Gaps = 14/616 (2%)
Strand = Plus / Minus
Query: 1 tcatattttgtcgttaaatagaactccctagtaatggccttagaaggaagaaagacccat 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 961 tcatattttgttgttaaatagaactccctagtaatggccttagaaggaagaaagacacac 902
Query: 61 ttcttgg---gaaggagttgagcacatggtatctatttactgagtactgattctggtctc 117
||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 901 ttcttgggaagaaggagctgagcacatggtatctatttactgagcactgattctggtctc 842
Query: 118 ctgaaactccttccttcataggtctggatgaatcctaggggcagtagcacttcctccgtt 177
||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 841 ctgaagctccttccttcataggtctggat--------ggggcagtagcacttcctccgtt 790
Query: 178 agttagcagttgtgaagcgtatgtatgagtatcaataaccctgtgtcctcaggtttcagg 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 789 agttagcagttgtgaagcgtatgcatgagtatcaataaccctgtgtcctcaggtttcagg 730
Query: 238 ctcgcttcatggtgttatttgttcttctctggagaattgttaacccctttccccagacac 297
||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 729 ctcgcttcatgctattatttgttcttc-ctggagaattgttaacccctttccccagacac 671
Query: 298 aagctgtatccttgtatgagccttttgatggatgaattggaattatttacttgtagtagc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aagctgtatccttgtatgagccttttgatggatgaattggaattatttacttgtagtagc 611
Query: 358 cattcatcagcattttctacttttaagac--tttttttttctttttaagaataatgaatg 415
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 610 cattcatcagcattttctacttttaagactttttttttttctttttaagaataatgaatg 551
Query: 416 aaacacttctctaaaaagaattcatcatatgatctcttagtttccacagagggaacatta 475
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 550 aaacacttctctaaaaagaattcatcatatgatctcttagtttccacagaggggacatta 491
Query: 476 ttaggtcatttgtggtccattggagaaagagcttgaagtggtttttaatgatggcgtttc 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 490 ttaggtcatttgtggtccattggagaaagagcttgaagtggtttttaatgatggagtttc 431
Query: 536 acactagagcttgagaggggtttccatggatgtggctaatctagcaatgtacatgacatg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acactagagcttgagaggggtttccatggatgtggctaatctagcaatgtacatgacatg 371
Query: 596 cccctagatctgtctt 611
||||||||||||||||
Sbjct: 370 cccctagatctgtctt 355
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space: 602202
Effective search space used: 602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_e15.g1 MSMg01no485_e15.g1 CHROMAT_FILE:
MSMg01no485_e15.g1 PHD_FILE: MSMg01no485_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:11 2005
(259 letters)
>mm_chr3_29904472_29905133
Length = 662
Score = 484 bits (250), Expect = e-141
Identities = 258/262 (98%), Gaps = 3/262 (1%)
Strand = Plus / Plus
Query: 1 agaaagatgcttcagggtaaaaaaaaa---gtacacaaaacttgtggctatattcaacga 57
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 agaaagatgcttcagggtaaaaaaaaaaaagtacacaaaacttgtggctatattcaacga 260
Query: 58 tgataagaaaagcattgcttgtggacaataataccctgtaggtaggcatgcctttgattt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataagaaaagcattgcttgtggacaataataccctgtaggtaggcatgcctttgattt 320
Query: 118 taggtaaagaatatagaaaggtaagattaagaggagatttatcaaggatggagagagatg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggtaaagaatatagaaaggtaagattaagaggagatttatcaaggatggagagagatg 380
Query: 178 cacaggtaagatgagaccaagtctaaagaaatgtgctacttattccaatcaaactgattt 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 cacaggtaagatgagaccaagtctaaagaaatgtgctacttattccaatcaaactggttt 440
Query: 238 gtaaaggggagctatgtaagac 259
||||||||||||||||||||||
Sbjct: 441 gtaaaggggagctatgtaagac 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 662
Length adjustment: 9
Effective length of query: 250
Effective length of database: 653
Effective search space: 163250
Effective search space used: 163250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
