BAC Information

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BAC

Clone NameMSMg01-485F22
Chromosome3 (Build37)
Map Location 116,824,565 - 116,824,883
singlet/doubletsinglet
Overlap genenone
Upstream geneVcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik
Downstream geneLOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485F22.T7 (MSMg01no485_f22.b1)MSMg01-485F22.TJ (MSMg01no485_f22.g1)
ACCAG564830AG564831
length764768
length of high quality
(start - end)		593 (60 - 652)503 (81 - 583)
definitionCHROMAT_FILE: MSMg01no485_f22.b1 PHD_FILE: MSMg01no485_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:17 2005CHROMAT_FILE: MSMg01no485_f22.g1 PHD_FILE: MSMg01no485_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTTAGCATTCAGAAGTATTTCTAAGTTCTCTAGACAA
TGAGCCTCCTTTGCCCTAGGTATCCATGCTCAGTTTAGGGAATGTTTAAG
CAACTATTCCTGAAAAATGCAATGCTCAGGGCTGGGTAAATGGCTCAGTC
AATAAAGTGCTTACTGCACAATCATGAAGATGTGACTTTGACCCTCAGCA
TGAACACTGCAAAAAGTCACGAAGTGGTGGGACAGAAACGATTCAGCAGT
TAGGAGCACCTACTGCTTTGGCAGACGGCCCAAGTTAGGTTCCCAGCGCC
CATATCAAGTGGCTTGCAATAATCATCCCTAACCCTAGTTCCAAGGGATC
TGGTGCCACCTTTCGGCCCCTGTAGATATCAGCACTCATAGGCCCATACA
CAGAAAGCCAGAAAGCCTGCATGTATGCACACACACACACACACGCACAC
ACACACACACACACACACACACACACACACACACACACACTAAAAATAAA
ATTTAAAATACAATCTTTAAAAGACAAGTGCTGCAGGATATGCTTGTAAC
TACAGCAGTGGATAAGTGGAAGTAGATTTTCTGGTCGGTCGATCTAACTC
AGTTAGAAAACAACACGTTCGGGGGAGACAATGTTTCAAGTAAAATAAAA
AACAGNCTGTCTGTCTGTCTATCTGTCTGTCTTGGAAGGACTACTAATGC
TGTGATGAAACACN

NNNNNTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCC
ATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCT
TTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGAT
CCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTG
CCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGAT
CTTACAGCACAAGCCATTGCTGTTCTGTTCATGAATTTTTCCCCTGTGCC
CATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCT
CTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAA
GTAGATAGGAATGGATCAATTTGCATTCTTCTACATGATGACTGCCAGTT
GTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCCACTGGATGGTT
TTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTC
TGGGTCTTCAATTCTCTTCCATTGGTCTACTTGTCTGTCGCTATACCAGT
ACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCCTTANGTCTGGC
ATGGTGATTCCCACAGAGGTTCTTTTATCCTTTGAGAGAGTTTTTGCTAT
CCTAGGTTTTTTGTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_f22.b1 MSMg01no485_f22.b1 CHROMAT_FILE:
MSMg01no485_f22.b1 PHD_FILE: MSMg01no485_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:17 2005
         (593 letters)



>mm_chr3_116824565_116825557
          Length = 993

 Score =  609 bits (315), Expect = e-178
 Identities = 318/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagttagcattcagaagtatttctaagttctctagacaatgagcctcctttgccctag 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttcagttagcatttagaagtatttctaagttctctagacaatgagcctcctttgccctag 260

                                                                       
Query: 61  gtatccatgctcagtttagggaatgtttaagcaactattcctgaaaaatgcaatgctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtatccatgctcagtttagggaatgtttaagcaactattcctgaaaaatgcaatgctcag 200

                                                                       
Query: 121 ggctgggtaaatggctcagtcaataaagtgcttactgcacaatcatgaagatgtgacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggctgggtaaatggctcagtcaataaagtgcttactgcacaatcatgaagatgtgacttt 140

                                                                       
Query: 181 gaccctcagcatgaacactgcaaaaagtcacgaagtggtgggacagaaacgattcagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gaccctcagcatgaacactgcaaaaagtcacgaagtggtgggacagaaacgattcagcag 80

                                                                       
Query: 241 ttaggagcacctactgctttggcagacggcccaagttaggttcccagcgcccatatcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  ttaggagcacctactgctttggcagacggcccaagttaggttcccagcgcccatatcaag 20

                              
Query: 301 tggcttgcaataatcatcc 319
           |||||||||||||||||||
Sbjct: 19  tggcttgcaataatcatcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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