NGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG
CGCGGAATTCTGAGCCTGACGAAGCCAAAGGGAGCCAACCAAATGGAGTA
AAAAATAAAATTGCAAAGTACAATTTAGTACACTTACAACTCAAAATCAA
CTAATGAATGCCCAGGAGTAATTTGCATAAAACTTTTATTTATTAGCAGT
GTATTCTTCTACACTTCAAAATAGAACGAAATATCTTCTGAAAGATAAAC
TATTCATAACAAAATACATGGCAAACCATTTTTTTATTATAAGTGGAGAA
TCTCTGTGCTATATAATCTCTATTTTATATACATCCCCTTCTTGGTGTGC
CTTATGTACGCACATGTGTATAAATAAGCTTAAGACATACACATGTAGAT
ACATATGACATATATATATATATACACACACACATAATTATGGACATTTT
ACAGTAGTCAACTTTACAATCATTTTAGTAGCTGCACTCATTAGTGTTCA
TAGAACAACTAAAAACGATAGTATGGTTCTCTTCCCCCACATCTCANATG
CCACCTCAATTACTTTATAGTGATAATCTGAAAGAAATAGTATTCTCTTC
CTATACAATGAACCAACTTTTTAAAATAATGACTCATAANAAAAATATTT
TACTTTTTTCAACTTTGGAACAGATAAACAATTTAATTCCTCTATGTTTT
TGATTCTTAAAACATATAATTCAACTTTCCACCAAGTG

GCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCATCTGATTCAGAGCTACC
AAGAGCTGGCTTCCTGAGCTCATCCAGCGATGAGCACAGGCTCCTTTTCC
TAGAGACCTCCGCTAATTGATCTTTCTTCTTTTCCCTTTTTCCTCTTTTT
CTTCTAATCTCTCTCCAGGTATTCCTACCTAACCTTAGCTTTTCCTCGGG
TTCAAGACCCTTGGAAAGGCCTGTATACTTATTTTGTGTACCATATTTCC
TCTTTGCTCCTACTCTCTCTCCCCGCTTTACTTCTGATAGATTGACTTTA
ATTTCGTCTAGAATTCGCCCTGCCTTAACCACTTGTTGACATGTGAAAAG
GAACAAAAGGGCTTCTAACACTAGACAAAGTTCAAGGCCAAACATACCTT
GTAAAGCTATTTCCCACTTTACTTCTGATAGACTGTCTTGAATTTCCTTA
GAAAGTTCAAGACCAGACTTACCTCGTAAAGCTATACTCACTGGTACTCT
TGTTCCCCAGCTGAAAAGTTCTGAATTCATGCAGTTGAATCCTTCTTAAC
AGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTG
GAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCTCGGAA
TTTCTCTTCCCGTCCCGGGTCTCAGCACCAATTGTTAATAAC

Query= MSMg01no485_g05.b1 MSMg01no485_g05.b1 CHROMAT_FILE:
MSMg01no485_g05.b1 PHD_FILE: MSMg01no485_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:19 2005
         (564 letters)



>mm_chr3_115975178_115976138
          Length = 961

 Score = 1004 bits (519), Expect = 0.0
 Identities = 549/564 (97%), Gaps = 9/564 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagggagccaaccaaatggagtaaaaaataaaattgcaaagtacaatttagtacactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagggagccaaccaaatggagtaaaaaataaaattgcaaagtacaatttagtacactt 260

                                                                       
Query: 61  acaactcaaaatcaactaatgaatgcccaggagtaatttgcataaaacttttatttatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaactcaaaatcaactaatgaatgcccaggagtaatttgcataaaacttttatttatta 320

                                                                       
Query: 121 gcagtgtattcttctacacttcaaaatagaacgaaatatcttctgaaagataaactattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagtgtattcttctacacttcaaaatagaacgaaatatcttctgaaagataaactattc 380

                                                                       
Query: 181 ataacaaaatacatggcaaaccatttttttattataagtggagaatctctgtgctatata 240
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 381 ataacaaaatacatggcaaaccatttttttat---aagtggagaatctctgtgctatata 437

                                                                       
Query: 241 atctctattttatatacatccccttcttggtgtgccttatgtacgcacatgtgtataaat 300
           ||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 438 atctctataatatatacatccccttcctggtgtgccttatgtacgcacatgtgtataaat 497

                                                                       
Query: 301 aagcttaagacatacacatgtagatacatatgacatatatatatatatacacacacacat 360
           |||||||||||||||||||||||||||||||||||||||||||||      |||||||||
Sbjct: 498 aagcttaagacatacacatgtagatacatatgacatatatatata------cacacacat 551

                                                                       
Query: 361 aattatggacattttacagtagtcaactttacaatcattttagtagctgcactcattagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aattatggacattttacagtagtcaactttacaatcattttagtagctgcactcattagt 611

                                                                       
Query: 421 gttcatagaacaactaaaaacgatagtatggttctcttcccccacatctcanatgccacc 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 612 gttcatagaacaactaaaaacgatagtatggttcttttcccccacatctcaaatgccacc 671

                                                                       
Query: 481 tcaattactttatagtgataatctgaaagaaatagtattctcttcctatacaatgaacca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tcaattactttatagtgataatctgaaagaaatagtattctcttcctatacaatgaacca 731

                                   
Query: 541 actttttaaaataatgactcataa 564
           |||||||||||||| |||||||||
Sbjct: 732 actttttaaaataacgactcataa 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 961
Length adjustment: 10
Effective length of query: 554
Effective length of database: 951
Effective search space:   526854
Effective search space used:   526854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)