BAC Information

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BAC

Clone NameMSMg01-485G12
Chromosome3 (Build37)
Map Location 45,779,104 - 45,779,688
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485G12.T7 (MSMg01no485_g12.b1)MSMg01-485G12.TJ (MSMg01no485_g12.g1)
ACCAG564858AG564859
length7241,513
length of high quality
(start - end)
585 (79 - 663)---
definitionCHROMAT_FILE: MSMg01no485_g12.b1 PHD_FILE: MSMg01no485_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:20 2005CHROMAT_FILE: MSMg01no485_g12.g1 PHD_FILE: MSMg01no485_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACGTATATCACACTTATTGATTCAACAAACTAGGGTTTAG
TGAATTCATTTCTTTGATTAGTCACTGGATTCTTATCTTGGATGATCATT
TTTTATGCTTGTCAACACAATATTAATGTCACAACATTTGAGGCCTGAAT
TGATACACTTCAGTAACAAAGATAGTTTGAAATGGTAGCATTATCTCTAC
TAGAGATCCATCATGCAGCTGAAGATAAGCTTTCTGAGGGTAGAATATCC
ATGAAGACAATCTTGATACATCTGTTCTTTCCCATGTGGCAAAGAATTGC
ATATCTACTTGCTTGAGTTGGTTTCATTGTCTGTGACAGGAGTGAAATGG
GTGAAAAAGCATTTCATATGGGCTATCCTGTCTAACTTTGAACTTTCTGG
TGGGGTAAGGTGGAGAATCACAAGACTGCTCTCATACTTTTTGAGATGTG
GAATAGCATACCTCCTTAATGAATTCTGTCTGTCACAACAGTATGAAGAC
CCTGTCAAATAATTGAAATATCATGGGATATATTACAGTCTTTGCAAGTA
GCACCTATGGCACAGTACCATAAACAGGCTGCAGTATCAATTATGTGGCC
CTTGTCTGGAAAATAAGACACCCAAGAGAGATTAATCTGTCAGCCTAGAA
AAAACTTGCTGATAAAAGGGAGAA
TCTGTTATCTTTACTATATTATTTGTCTAGATATTGCTTTACAATAATCG
AGCAGCGTTTATGTCATATTCTCTCCACACACAAGATGGAGATTATGATC
AATAGAGTGTAGCGGATTGTTTATCTTCTCCTCGTAGATATCCTAGATAG
TGCGTTATAGAATGNAATACGCCTACATGGTGAGATGCACGTTATGCGTG
CACATCGCAGTGCCTACGGTGCGATGATGAGGCGGCACTTTATCACATAG
TTATTGATAGTTCAACTAGTAGATAGAAGCACATGTATATATGAGATGTA
CTCCCGGTCGTGCTATATGCAGGGTGAGGCAGGACGCGTGTGGTGTAGCA
TGATGTTACCNCATGCTGCGTATGCAGCGCGGTGCTAGATGATGTACACT
AGATTTATGTTAGTGTGAGTCGAGCTGTGCTCCGCAGAGCTAAGTATATC
TATCTCGTATCTATACTAAGTAGTGAGCGACGTAAATGACAGATACGCGT
AGTAACTAAGCATGTATTGACTAAAGAANCCACGTAAAGAATGACATTAG
ATGTAAAACGATGCCATGATGCCATATGAAGGCAACAGATATAGCAACTA
TGAGAGTACTATTACTATTCTGTATGTGCGCTCTGCTGTTAGTAAGTAAC
ATTCACTATATTCCTACGTCTGTTTANTGATGTAGGATATATATCTCTAT
ATGTAANTTGGAGAGGTGACGCTCGTCTGTGATATGCACTAGATTTGACA
CATGATGTATATGATGTATATATGTGACGTAGATGATAGTGGCATGAGAA
ATGTGTGTTAGATATATGTGTAGTTCACTTGTGTAGTTAGCGAATCACNC
AACGCATCAACATGCTAACTAATGATCTTATATATACTTTAATCTAATAT
CATACGTGTCACGAGCGATATACCGTCGTCCTCACTCTGAGACANCGCCT
AGATGTACGTATAATAGGTGAGATGNGTGCNTGTACTATGAGATAGTGAT
ATNAGGTAGTTATACATATAGTATAGCATATCAAGCGATAATAATTAGGT
GTGACTACGTATATATACAACATACGACGGTAGAACGTCAGATAGATGTA
AAGTTAACAGTACGTAGATGATAGTGCGTACTAATATGTACACTTCATCA
CAGATACATGTATCAGTGCGGTGTGGGAGTCATTTTAAGGTGAGTGATAC
TACTGTGTACAGAAATAGTAATATATATGANATGACTAACATGTGAGATT
ANAGCGATCAGCACCATGATGTATCGTGAATAGTTACACTGAAGAGTAAT
CGTAGACACTCGTGCTACATGTGAGATATGAAGACTAGTGTGAGCAGCTG
CTAATTGATGTAGACGCTACTNCGAGGTGCAGAAGAGAGGGATATAATAT
TGACGCGGACCGAGCGNATATATAGATATTCAATAGCATATTATTAAGAT
TTATGGCAATATGGTTCTGGCGCGGACTGTTAGACTCTATATCTATACTA
TAATGTAACGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_g12.b1 MSMg01no485_g12.b1 CHROMAT_FILE:
MSMg01no485_g12.b1 PHD_FILE: MSMg01no485_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:20 2005
         (585 letters)



>mm_chr3_45778904_45779888
          Length = 985

 Score = 1094 bits (566), Expect = 0.0
 Identities = 581/586 (99%), Gaps = 2/586 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattcaacaaactagggtttagtgaattcatttctttgattagtcactggattcttatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gattcaacaaactagggtttagtgaattcatttctttgattagtcactggattcttatct 726

                                                                       
Query: 61  tggatgatcattttttatgcttgtcaacacaatattaatgtcacaacatttgaggcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tggatgatcattttttatgcttgtcaacacaatattaatgtcacaacatttgaggcctga 666

                                                                       
Query: 121 attgatacacttcagtaacaaagatagtttgaaatggtagcattatctctactagagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 attgatacacttcagtaacaaagatagtttgaaatggtagcattatctctactagagatc 606

                                                                       
Query: 181 catcatgcagctgaagataagctttctgagggtagaatatccatgaagacaatcttgata 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 catcatgaagctgaagataagctttctgagggtagaatatccatgaagacaatcttgata 546

                                                                       
Query: 241 catctgttctttcccatgtggcaaagaattgcatatctacttgcttgagttggtttcatt 300
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caactgtcctttcccatgtggcaaagaattgcatatctacttgcttgagttggtttcatt 486

                                                                       
Query: 301 gtctgtgacaggagtgaaatgggtgaaaaagcatttcatatgggctatcctgtctaactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gtctgtgacaggagtgaaatgggtgaaaaagcatttcatatgggctatcctgtctaactt 426

                                                                       
Query: 361 tgaactttctggtggggtaaggtggagaatcacaagact-gctctcatactttttgagat 419
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 425 tgaactttctggtggggtaaggtggagaatcacaagactag-tctcatactttttgagat 367

                                                                       
Query: 420 gtggaatagcatacctccttaatgaattctgtctgtcacaacagtatgaagaccctgtca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtggaatagcatacctccttaatgaattctgtctgtcacaacagtatgaagaccctgtca 307

                                                                       
Query: 480 aataattgaaatatcatgggatatattacagtctttgcaagtagcacctatggcacagta 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aataattgaaatatcatgggatatattacagtctttgcaagtagcacctatggcacagta 247

                                                         
Query: 540 ccataaacaggctgcagtatcaattatgtggcccttgtctggaaaa 585
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccataaacaggctgcagtatcaattatgtggcccttgtctggaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)