BAC Information

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BAC

Clone NameMSMg01-485G14
Chromosome3 (Build37)
Map Location 125,930,972 - 125,931,595
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a
Downstream geneArsj, Camk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485G14.T7 (MSMg01no485_g14.b1)MSMg01-485G14.TJ (MSMg01no485_g14.g1)
ACCAG564862AG564863
length1,671725
length of high quality
(start - end)		---623 (83 - 705)
definitionCHROMAT_FILE: MSMg01no485_g14.b1 PHD_FILE: MSMg01no485_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:21 2005CHROMAT_FILE: MSMg01no485_g14.g1 PHD_FILE: MSMg01no485_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCACATAANGATCGGACGAGGGAATGGCTANAGATATCTAATTTATNTG
GCTGATTGCTTGTTCTTTGTCTCTCCCTAGANGCAAACTGGGGCGGGNGG
TGCNCCCCGTGTGTTCGTTAGTATCTTGTCCGTGTTATGGGCGGGGGTGA
CGGTGAGAGGTGGGCGTGTTTGCCGTATTCGCCTACGTGATTATCATTGT
AGGTGTGATGATAATTTAGGGCAGACCGCCGATTTATCGAGACCGGAAGT
GATACACGAGGATGTGGAGGTTGACAGGACTCGAGGATTATCTGTCCGAC
TGTGTATTAGCTCCCGCTGTACTTACCGTCCTGGTGAGCTCACCCACACT
CGTATGCCTACTAGATCGGTGAGATCTGAGCTCATGTCACTCGCGCCGCG
CATGCATACCGTCGTGCTTACTTGTGTTTCATCTTCCTTAATTGTTTTGG
CCACCATTCACCGCGTCACATACNACAGCTGAGCCAGCCGCGCGTATCGC
GTGCGCGGTATATCCCACGTCTTCTGTCTCCTGATTCGGTTCCTCTAGCT
CGTTCTTATGATTGTGGGTACTCGTGTAGGNGAGACACCCATCAATGNAC
CTCGCACGCCGGCGGAGAGCGATGATAGCGAGTGAGCTGCGCGTTAGTGG
AATATTAGGCGTACATATACCCGCCTCTTTTCTCTCCNTATCTGCCCACA
CCACCACAGGAGATGATGATTGATGGGTGTGAGACGGCGGAGCCGCGCAG
AGGAACTTACCGAGCGCCCGTGAGTCTCGTGTGCAGTGAGCAACANCAAA
CAACAACCAACACACTACGATACAACATGAGTCTTCGTGCATACGANCGT
TACGACAGATAACATCGGCGTGTGGCTATTGATTTGTGTTCGGCGCGCTG
CTTGTCGCTGCGAGACGCGGTGGGATCCACTACTACNGTAGTTTGATGAC
TGAACGCGCGGACTGTATCTAGTTCGAGGCATCGATAGTGCGCGGTGTTG
CGCGCCGCGATAGCCTGTATGACGCACACACCAGTATGTCCCAGACGCTA
CTATTAATTGAACGTCATGCTGTATATACGTGCGATCGACACCTCCGACG
CGTATTCAATCTGCTCTGGCGACGCAATCATGTGTATGAGCCGCTCCTAT
ATATAATGTATAGCTGNTATGAGATACGTCATTCACGACTCTCGCCAGAC
TGTGTTGCCATAATAACTATTAGACCGATAGTAGTATGCAGNATGATAGG
TATACTAGATACACANCAGGGTAACATGTGATTACGTCACGACACCACAA
CGACCCGTGTAGTATTGTACCGGATGAGCGCGCGACAGACAGTCGACTAT
ATGGTATCGCGTAGATATAGACTCCTCTGATGCTGTCCTACTACGCGTCC
TGATAGACCCATTATANGTGGCAATCGCGTAGTATACATANATCCCACGT
CGCATGAGGCGTCAGCGTGATGTGTGNCACGTCGCGCCGTACGATTTCTC
GCACCTATACAGTGACGACGTATGAGTATANTACTAGGAGACTAGGTAGT
GTTGACNGCGTAGACATGCCGTATGCGTCTGCTATACTCTGATACTCGTC
CGCGTCTCTACTGAACCGCCGTGNTCCGACACGACTGCGTNGTGTCTGAT
CAGGTAGAACTGCCGATGNTG

GTTTTTGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCGCCTTAGCCTCCTA
AATACTAAAATTATATTTTGTCCAGCTCGTTTTGTCTTAGAAATTACTAA
TATGATCAATCCTTTGAGATACAATTAAAAACCATATTGAATGTGAAATG
GAATGGGTTAAGTTTGATAATATCTGATCAATGAAAAAAAAATCTGAGCT
TCCTCTATGTTATACAACATATTTCCTCTGCTGATGTGAACTACAGGTTT
ATGTTACAGTTGCTAAGAAATCCTGATGAGATAGTTGAATAGTGAATACC
TTAACTTTCAGAGCTTTAGAATCAGGAAAAGGATGGAAGAGAGCCAGAAG
TGATTGCCCTCAGAATTTTAATGAAGAAAGTTCAATATTCACTTTATATT
TTCTTGTGGAAAACAGAACAAATGCTAATTCAGACATTTTAGCTTCTCTC
ACTGCTTCAGAATAAATCCATTTCCCTGACCATGTCAGGTAATTTGCACA
GTGATGTAGTTATTCCTGGTGGGTGTACAATGCAGATGTAAGGCAGGCTC
CTGGGGAGTCTATAGGTGGTCTTTCCAGGAAGCCAATTACAGCAGAACTT
GTGGCTATAATTTAGCTTCAGGAAGCACAAGGGCTTGTTTCAGATTAAAA
CAGGGTAGGCTTTCATGCACAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_g14.g1 MSMg01no485_g14.g1 CHROMAT_FILE:
MSMg01no485_g14.g1 PHD_FILE: MSMg01no485_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:21 2005
         (623 letters)



>mm_chr3_125930772_125931795
          Length = 1024

 Score = 1137 bits (588), Expect = 0.0
 Identities = 615/624 (98%), Gaps = 1/624 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccccgccttagcctcctaaatactaaaattatattttgtccagctcgttttgtcttagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ccccgccttagcctcctaaatactaaaattatattttgtccagctcgttttgtcttagaa 765

                                                                       
Query: 61  attactaatatgatcaatcctttgagatacaattaaaaaccatattgaatgtgaaatgga 120
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 764 attactaatatgatcaatcctttgagatacaattaaaaaccatgttgaatgtgaaatgaa 705

                                                                       
Query: 121 atgggttaagtttgataatatctgatcaatg-aaaaaaaaatctgagcttcctctatgtt 179
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 704 atgggttaagtttgataatatctgatcaatgaaaaaaaaaatcagagcttcctctatgtt 645

                                                                       
Query: 180 atacaacatatttcctctgctgatgtgaactacaggtttatgttacagttgctaagaaat 239
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 644 atacaacatatttcctctgctgatgtgaactacaggtttaggttacagttgctaagaaat 585

                                                                       
Query: 240 cctgatgagatagttgaatagtgaataccttaactttcagagctttagaatcaggaaaag 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 584 cctgatgagatagttgaatagtgaataccttaactttcagagctttagaatcagaaaaag 525

                                                                       
Query: 300 gatggaagagagccagaagtgattgccctcagaattttaatgaagaaagttcaatattca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 524 gatggaagagagccagaagtgattgccctcagaattttaatgaagaaagttcaatataca 465

                                                                       
Query: 360 ctttatattttcttgtggaaaacagaacaaatgctaattcagacattttagcttctctca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctttatattttcttgtggaaaacagaacaaatgctaattcagacattttagcttctctca 405

                                                                       
Query: 420 ctgcttcagaataaatccatttccctgaccatgtcaggtaatttgcacagtgatgtagtt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctgcttcagaataaatccatttccctgaccatgtcaggtaatttgcacagtgatgtagtt 345

                                                                       
Query: 480 attcctggtgggtgtacaatgcagatgtaaggcaggctcctggggagtctataggtggtc 539
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 attcctggtgcgtgtacaatgcagatgtaaggcaggctcctggggagtctataggtggtc 285

                                                                       
Query: 540 tttccaggaagccaattacagcagaacttgtggctataatttagcttcaggaagcacaag 599
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tttccaggaagccaatttcagcagaacttgtggctataatttagcttcaggaagcacaag 225

                                   
Query: 600 ggcttgtttcagattaaaacaggg 623
           ||||||||||||||||||||||||
Sbjct: 224 ggcttgtttcagattaaaacaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1024
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1014
Effective search space:   621582
Effective search space used:   621582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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