GTTTTGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGA
ATGCGCGGAATTCTATATNAGTAACATGAACCCAGTCAAGAACTACACCA
GGAAGAGAGGAATAGTGTTTAAAATAAAATAAACTAAAATAAAATAAAAT
AAAATAAAAACAGTACAAAAACCAAACAACAACAAAAAGATGCTAGATAT
ACAAATGACGAGAGAGAGAGACAGAGAGAGACAGAGACAGAGACAGAGAC
ACAGACAGAGACTTAGACAGAGACAGAGAGAAGGAAGGAAAATGGATTTC
AGAGCTCTCCCAGAGGCAGAAGGAAATTTTTATCATCCTGCTTCCTCTCT
GGCCCTACAGGAGACTTCCTTAGTTCTGGTTTTATCAAGTTCCTTTCTCT
CTATATATTGTCTGTCCTTAGTGCACCAATCTGTCCATGTGTTAATTTGT
GTCTGTTTTCGCTTCGTTGTCTGAATGACTGCTGTTCAATGTTTCATGTT
GAAAAGAAAAAATGGTTAAAACTTTATCTTTTGGCTATCCATCTCTTGAT
TCTGTCTCAGTTTGCACAGTGGAGGTTAATTTAAGTTGCCCTGCTCCTTT
AGCAAGGAGTCAAGTGCAACAGAAGCCCTACTGAAAAGTTGTTTTTAAAA
TGGATCAGTGGGTATTTTGTTCCCCATTCTAAGGAGGAAAGAAGTATGCA
TACTTTGGTCTTCCTTCTTAAT

AAAANNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGGGTACTGGTTAGTTTACT
CATCACACACTTCCTTTTAATCCAGGGCCACTGCTACCATGAAATCAGAC
AAACTAACTGCAGATCTTCACTCCTCCTTTTCCTTTTTAGTTCCAAAGTT
ACCATTCTCATCCCCATCTCTGTAGTAGAACACCTGATGGTTTCTCTTTC
CTTCCTTCAGTGAGACTGGGTCTAAAAGATTATAAAGAGAGATGGAAATT
TGCTGTCATCCTACTAGGTTTCATGTTAGAAAGGGCCTCTGCAATAGCAA
GGGGTGGCTGTTGGAGTTGGGAGCTGTTTCTCTAGCCCACTTTTCTTGTG
TATTCTCAAGGAATGAAAATATATCTTATAATATGAGTAAAACAATCAAT
TACTAAAAATCTCCAAAACTGATAGAACTGTCAAAAACTGCTAGACTCTG
TATGTGGTTCAGATTTTTTCTTTTGAAATGTCATTTCTACATACTTAAAA
AGATTATTAAGAAATACAATTTGAGAAAAATATCTTTTAAATGTTATCAA
TATTTTCAAAACACACAAATAAATTCAATGACAAACTATCACACAATAAA
TGAAACATAAATTAATAACTAAATTAACAGAGGAGTGTACTGGGAGTAAT
GTATGCAACCTGGAGTAAGAAACA

Query= MSMg01no485_i15.g1 MSMg01no485_i15.g1 CHROMAT_FILE:
MSMg01no485_i15.g1 PHD_FILE: MSMg01no485_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:31 2005
         (395 letters)



>mm_chr3_17174247_17175041
          Length = 795

 Score =  717 bits (371), Expect = 0.0
 Identities = 386/391 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggcctctgcaatagcaaggggtggctgttggagttgggagctgtttctctagcccacttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 595 ggcctctgcaatagcaaggggtggctgttggagttgggagctgtttctctagcctgcttt 536

                                                                       
Query: 65  tcttgtgtattctcaaggaatgaaaatatatcttataatatgagtaaaacaatcaattac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcttgtgtattctcaaggaatgaaaatatatcttataatatgagtaaaacaatcaattac 476

                                                                       
Query: 125 taaaaatctccaaaactgatagaactgtcaaaaactgctagactctgtatgtggttcaga 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 475 taaaaatctccaaaactgatagaactgtcaaaaactgctagattctgtatgtggttcaga 416

                                                                       
Query: 185 ttttttcttttgaaatgtcatttctacatacttaaaaagattattaagaaatacaatttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttttttcttttgaaatgtcatttctacatacttaaaaagattattaagaaatacaatttg 356

                                                                       
Query: 245 agaaaaatatcttttaaatgttatcaatattttcaaaacacacaaataaattcaatgaca 304
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agaaaaatatcgtttaaatgttatcaatattttcaaaacacacaaataaattcaatgaca 296

                                                                       
Query: 305 aactatcacacaataaatgaaacataaattaataactaaattaacagaggagtgtactgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aactatcacacaataaatgaaacataaattaataactaaattaacagaggagtgtactgg 236

                                          
Query: 365 gagtaatgtatgcaacctggagtaagaaaca 395
           || ||||||||||||||||||||||||||||
Sbjct: 235 gaataatgtatgcaacctggagtaagaaaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)