Query= MSMg01no485_i16.b1 MSMg01no485_i16.b1 CHROMAT_FILE:
MSMg01no485_i16.b1 PHD_FILE: MSMg01no485_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:31 2005
(559 letters)
>mm_chr3_120171428_120172386
Length = 959
Score = 1019 bits (527), Expect = 0.0
Identities = 551/563 (97%), Gaps = 8/563 (1%)
Strand = Plus / Plus
Query: 1 gcattttggttccttacaaggggttttgaagacccctccctgccccagcttgtcattaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcattttggttccttacaaggggttttgaagacccctccctgccccagcttgtcattaac 260
Query: 61 ctctccagtgttgttctctgtaccacacaagaattgccacatgacttgtccatgaagtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctccagtgttgttctctgtaccacacaagaattgccacatgacttgtccatgaagtta 320
Query: 121 taatggtcagaggtgatgtgacgggctagcacaggtgctagttttctccatgtatctgag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 321 taatggtcagaggtgatgtgacgggctagcacaggtgctagttttctccatggagctgag 380
Query: 181 aattacacattaactctggtcaactctctgcagacagaattcttttcatggcttcctatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 381 aattacacattaactctggtcaactctctgcagacagaattcttttcatggcttccaagt 440
Query: 241 ----tttttttgtgctgaagctctgtaaattgaattaagacacagcttttctaagaaccg 296
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcttt----gtgctgaagctctgtaaattgaattaagacacagcttttctaagaaccg 496
Query: 297 gcactcctgggataagaaacaaggaaaggctctcccctttgccaagagatttacagtcta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcactcctgggataagaaacaaggaaaggctctcccctttgccaagagatttacagtcta 556
Query: 357 gtgatgagaaaaatacacgcatgtgctctcagtggacaccagggccctccactccaatcc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtgatgagaaaaatacacgcatgtgctctcagtggacaccagggccctccactccaatcc 616
Query: 417 tgattttcacacttgccagaacagctgacacagaaattctagaactatttattgttttaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgattttcacacttgccagaacagctgacacagaaattctagaactatttattgttttaa 676
Query: 477 actttgcactctgttactgtatgttaattgctcagaatatgttgtttcattgtggcaatt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 actttgcactctgttactgtatgttaattgctcagaatatgttgtttcattgtggcaatt 736
Query: 537 tcatacatatatcaacatgagtt 559
|||||||||||||||||||||||
Sbjct: 737 tcatacatatatcaacatgagtt 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_i16.g1 MSMg01no485_i16.g1 CHROMAT_FILE:
MSMg01no485_i16.g1 PHD_FILE: MSMg01no485_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:31 2005
(592 letters)
>mm_chr3_120291368_120292359
Length = 992
Score = 748 bits (387), Expect = 0.0
Identities = 393/395 (99%)
Strand = Plus / Minus
Query: 194 gctgctgctctactggatcacttcctacccatacttgggcaagaaactgtaattgatctc 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 gctgctgctctactggatcacttcctacccatacttgggcaagaaactgtaattgatctc 933
Query: 254 tatgggccacacacataaggcacaaccatgggaagggttgaagagaggattctggtaagt 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 tatgggccacacacataaggcacaaccatgggaagggttgaagagaggattctggtaagt 873
Query: 314 gagagaaggggagtaaaggaggaaaatcaataatgaacatgagtaaaatttattataaat 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gagagaaggggagtaaaggaggaaaatcaataatgaacatgagtaaaatttattataaat 813
Query: 374 gtgtgacaatgacaaaaagtaaaacctagaaaagaattttccagaagtactatgcgctgt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gtgtgacaatgacaaaaagtaaaacctagaaaagaattttccagaagtactatgcgctgt 753
Query: 434 acatgagtctctagaacaagtgttaaaactggagtgcttgaccaatatattttctatgcc 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 acatgagtctctagaacaagtgttaaaactggagtgcttgaccaatatattttctatgcc 693
Query: 494 ctgacactggccctgatcaccattctgcttttcaactaaagctggtttttgaagaatgcg 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctgacactggccctgatcaccattctgcttttcaactaaagctggtttttgaagaatgcg 633
Query: 554 cattaacttgcagttaacactacagtaaggagccg 588
||||| |||||||||||| ||||||||||||||||
Sbjct: 632 cattagcttgcagttaactctacagtaaggagccg 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
