BAC Information

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BAC

Clone NameMSMg01-485I20
Chromosome3 (Build37)
Map Location 37,060,949 - 37,214,211
singlet/doubletdoublet
Overlap geneIl21, Cetn4, Bbs12
Upstream geneD3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2
Downstream geneLOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485I20.T7 (MSMg01no485_i20.b1)MSMg01-485I20.TJ (MSMg01no485_i20.g1)
ACCAG564969AG564970
length735749
length of high quality
(start - end)		360 (329 - 688)388 (78 - 465)
definitionCHROMAT_FILE: MSMg01no485_i20.b1 PHD_FILE: MSMg01no485_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:32 2005CHROMAT_FILE: MSMg01no485_i20.g1 PHD_FILE: MSMg01no485_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,060,949 - 37,061,308)(37,213,824 - 37,214,211)
sequence
GGAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGGAATTCCTGACTCTTCCCAGACTGTGTGTGCAATGGGGACTAAACACC
TTAACATGTATATACCAACCTAGGTCTCAGTGTAGTATCAGTTTATGAGA
ACACTGAGGTCAAAGTTAGGGGTCTTGCTCAGGAAAAAGGAATGGCCCCT
GAAACACAAGGAAGCTGCCACTGTGGCCTCCTCCCGTTAGAAGAGAGCCA
TCGCTGTGGAGCTGCCCCAGTGATCAGACTTCAGGGTAAAAATGACAGGC
TCTCCCTTGCAGATGTGCCTAGGATTCTGGCAATAGCAGGGCCCCTCACT
GTGTGATGTATCTATAACTTCTCAGGGGACTAAAAGTTCATGGAACAGCA
AAACTTACCCAGGAGAGAGAGTTTCTTCAGGGAGAGAACTATTCACGTCT
AGCTCACTGATTCCCTCTGTGTATTGAGTCATGGATGCTTGGCACTGCCA
GGGTTCTGCTGGCTCCCCCTTTCCTTTCTTGGCTGCTAGGAACTATCTCT
CCATTTTCCTCTTTATTCCCAGGGACTTTTCTGGTATTAACCTGCTACCA
AGCAATATGGAGAGAAAGTTAACCACTGGTTTTTCATAGTTCTTTAACAC
GTTGTTAAATCAGACTCTTATCTAGGAACAAAGTGAATGTCTGCGAGCAA
GGAGGGGCTGACGTGTCTTAGCATTGTGCTTTGGN

CCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACTGTATTGGAAGAAGTAAGCA
TTTTGTGCCAATACCATGCAGTTATAAAAACCGTAACTTTCTGGTAAGTT
TGAAGCCGAGAAATCTGTGTTTTAAATGTTCCTTTCTTTACATTTGTATT
TGTAATTTGCTATACGCTGATTTCTTTGGAGCCAGCAGTCTCTCTCTCCC
TTCATGAGTACCTAGTTAATAAAAACAAAATGTTGAAAGGACATGTTTAA
AAGTCTGGCTGCATGCAGCCCCCCAACCACTGGAGCAGTGACTGGATGAG
CAGGGCGAAGATACCAAGTGGAGGGGACTCCCCCTCCTCAGAGAAGGGGA
CCAGAGCATGGGGAGGATCTGTGTGAGGGGATATTGGGAGGAGATGGGGG
CTGATATTGGGATGTNNNNNNNNNNNNNNNNNTNNNNNTNNNTNNNNTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTNTTNNTTTTTNTTTTTTTTTTTTTTTTTTNTNTTTTTTT
TTTTTTTTTTTTTTNTTNNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTGATTNTTGCTTTGTNTGTTTTTTTGTTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_i20.b1 MSMg01no485_i20.b1 CHROMAT_FILE:
MSMg01no485_i20.b1 PHD_FILE: MSMg01no485_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:32 2005
         (360 letters)



>mm_chr3_37060749_37061508
          Length = 760

 Score =  696 bits (360), Expect = 0.0
 Identities = 360/360 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcaatagcagggcccctcactgtgtgatgtatctataacttctcaggggactaaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcaatagcagggcccctcactgtgtgatgtatctataacttctcaggggactaaaagtt 260

                                                                       
Query: 61  catggaacagcaaaacttacccaggagagagagtttcttcagggagagaactattcacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catggaacagcaaaacttacccaggagagagagtttcttcagggagagaactattcacgt 320

                                                                       
Query: 121 ctagctcactgattccctctgtgtattgagtcatggatgcttggcactgccagggttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagctcactgattccctctgtgtattgagtcatggatgcttggcactgccagggttctg 380

                                                                       
Query: 181 ctggctccccctttcctttcttggctgctaggaactatctctccattttcctctttattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggctccccctttcctttcttggctgctaggaactatctctccattttcctctttattc 440

                                                                       
Query: 241 ccagggacttttctggtattaacctgctaccaagcaatatggagagaaagttaaccactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagggacttttctggtattaacctgctaccaagcaatatggagagaaagttaaccactg 500

                                                                       
Query: 301 gtttttcatagttctttaacacgttgttaaatcagactcttatctaggaacaaagtgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttttcatagttctttaacacgttgttaaatcagactcttatctaggaacaaagtgaat 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_i20.g1 MSMg01no485_i20.g1 CHROMAT_FILE:
MSMg01no485_i20.g1 PHD_FILE: MSMg01no485_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:32 2005
         (388 letters)



>mm_chr3_37213624_37214411
          Length = 788

 Score =  750 bits (388), Expect = 0.0
 Identities = 388/388 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgtattggaagaagtaagcattttgtgccaataccatgcagttataaaaaccgtaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aactgtattggaagaagtaagcattttgtgccaataccatgcagttataaaaaccgtaac 529

                                                                       
Query: 61  tttctggtaagtttgaagccgagaaatctgtgttttaaatgttcctttctttacatttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tttctggtaagtttgaagccgagaaatctgtgttttaaatgttcctttctttacatttgt 469

                                                                       
Query: 121 atttgtaatttgctatacgctgatttctttggagccagcagtctctctctcccttcatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atttgtaatttgctatacgctgatttctttggagccagcagtctctctctcccttcatga 409

                                                                       
Query: 181 gtacctagttaataaaaacaaaatgttgaaaggacatgtttaaaagtctggctgcatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtacctagttaataaaaacaaaatgttgaaaggacatgtttaaaagtctggctgcatgca 349

                                                                       
Query: 241 gccccccaaccactggagcagtgactggatgagcagggcgaagataccaagtggagggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gccccccaaccactggagcagtgactggatgagcagggcgaagataccaagtggagggga 289

                                                                       
Query: 301 ctccccctcctcagagaaggggaccagagcatggggaggatctgtgtgaggggatattgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctccccctcctcagagaaggggaccagagcatggggaggatctgtgtgaggggatattgg 229

                                       
Query: 361 gaggagatgggggctgatattgggatgt 388
           ||||||||||||||||||||||||||||
Sbjct: 228 gaggagatgggggctgatattgggatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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