BAC Information

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BAC

Clone NameMSMg01-486G07
Chromosome3 (Build37)
Map Location 75,591,390 - 75,591,664
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667459, BC050789, Serpini2, Wdr49, Pdcd10, Serpini1
Downstream geneGolph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486G07.T7 (MSMg01no486_g07.b1)MSMg01-486G07.TJ (MSMg01no486_g07.g1)
ACCAG565607AG565608
length738749
length of high quality
(start - end)
406 (329 - 734)192 (336 - 527)
definitionCHROMAT_FILE: MSMg01no486_g07.b1 PHD_FILE: MSMg01no486_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:41 2005CHROMAT_FILE: MSMg01no486_g07.g1 PHD_FILE: MSMg01no486_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAACAGGC
GCGGAATTCTTTCTCATTCTCTAGAAAAGGTTTACACCTGCTGAAAGATC
AGTTAGATCCAAGAGAGGGCAGACTATGGCCAGGTCATTAGCTCTAGGAA
TTAACAATGGCTTGTTTTCACCCCTCTTCAAGATACAGAGAGCAGAATAA
AGTGACAGCCTTGCACTGTTTCTTATTTGAATAAGCCAAATACATTTATT
CATAAAGTAAGTAAAATACTTTTCTTTGTTCCATATACTTATTTAATTTT
TGTTTTGTTTTCTTTTAGAGTATTCTTGTGTCTGCCAAATTTAAAGGTTC
TGGATGGGACCTTGAAGTCTCCAGAAGATTGTTCCCCTCCAGAACACAAT
ATTTTTTCCAAACTATGTATTTTATTATAAAAAAAACTGCATAGAAAGAA
AACAGTTACTGTTACTGACAAAAAGCTAAAAATAAAAGTAATGCATCATT
ATATACTACATGAATTTATATTTGCATAATAGCTACATGTGTAATATATA
CATATCCAGTATTTATTCTCTCTTGAAATCATGGTAGGAGAATATTTCTT
TAATGTTGGGAGCCGCCCTCACATTTGCCATTATAAGATGGTGCTGACAG
CTGTGTTCTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTC
CCGCCATGTGTTCTGCCTTTCTCGTGATGACAACTGGG
CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXGCTAGAAAAATCGTTATACAAGCTTGAGGCAGAAGAT
GCTTGATATAAGCATTACTATTCTATATTTAGACTGAGACAAGATATGAG
GGCAGAAAAATAAGCATTTCAATAACACACACATAACCTTTACATGATGC
ACAAAAACATTTTGCCTACAGGACTTGAACTATATCATTAGCGCTTTTAG
TTGTCCCTCTTTGAGACTTGAAGCCTTGGATCCTTCAGCCACCATAACCA
TGCATATAATCTCTTATATTATATTTATTTCTGCGAAAAAGTTATTTGCA
TACCCTCTTAGTTCTTTTCTCTGGAGAAATGTGTTGGCTCTGAGGATTTA
GGCAATAGTTCTCTCTTTGCTCTAAATATGTTTATCCAAAATTCTCTTGT
TGAAAGTTAATTGTTAATGTGACCATTTTAAGAGTTGAGGCCCTTTGGTG
GATGATTAAGTCACAGTGATTCTCATGGTGAATGAATATTACTGCCATTA
TTATAACCAAAAAAAGAACACTTAAGAGAGCACATTTGCCCTTCCCACCA
TATAAGGATGTAGCAGGAAAAAATATGTCACCTTTTGAAGCAGCGAACAA
GTCTCTGACAGAATGGAATTTCTTTGGTGCCTTGATTTTGTAATTCTCCA
CGCCACAAAGATGTTATAAATGTTCGCAGACTTTATTAAATTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_g07.b1 MSMg01no486_g07.b1 CHROMAT_FILE:
MSMg01no486_g07.b1 PHD_FILE: MSMg01no486_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:41 2005
         (406 letters)



>mm_chr3_75591190_75591995
          Length = 806

 Score =  532 bits (275), Expect = e-155
 Identities = 275/275 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctgccaaatttaaaggttctggatgggaccttgaagtctccagaagattgttcccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtctgccaaatttaaaggttctggatgggaccttgaagtctccagaagattgttcccct 260

                                                                       
Query: 61  ccagaacacaatattttttccaaactatgtattttattataaaaaaaactgcatagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagaacacaatattttttccaaactatgtattttattataaaaaaaactgcatagaaag 320

                                                                       
Query: 121 aaaacagttactgttactgacaaaaagctaaaaataaaagtaatgcatcattatatacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacagttactgttactgacaaaaagctaaaaataaaagtaatgcatcattatatacta 380

                                                                       
Query: 181 catgaatttatatttgcataatagctacatgtgtaatatatacatatccagtatttattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgaatttatatttgcataatagctacatgtgtaatatatacatatccagtatttattc 440

                                              
Query: 241 tctcttgaaatcatggtaggagaatatttctttaa 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcttgaaatcatggtaggagaatatttctttaa 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)