Query= MSMg01no486_g18.b1 MSMg01no486_g18.b1 CHROMAT_FILE:
MSMg01no486_g18.b1 PHD_FILE: MSMg01no486_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:43 2005
(667 letters)
>mm_chr3_153181685_153182751
Length = 1067
Score = 1228 bits (635), Expect = 0.0
Identities = 659/667 (98%)
Strand = Plus / Minus
Query: 1 aaggaaaatcttcctctcagcctcataccccatcccacctggctctcacacacagaaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 aaggaaaatcttcctctcagcctcataccccatcccacctggctctcacacacagaaacc 808
Query: 61 caggggtgagtggagggggtcacagtggacacacggtctgaactgagttatgtctgtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 caggggtgagtggagggggtcacagtggacacacggtctgaactgagttatgtctgtgtt 748
Query: 121 tggggacatggggatggtgggaagggacagggttgagtgatgcgaagaaggctgtgagat 180
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 747 tggggacatggggatggtgggaggggacagggttgagtgatgtgaagaaggctgtgagat 688
Query: 181 cgaggtagcaaggctggaaacatggaggacaggaatggtgggatggaccagggaagggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cgaggtagcaaggctggaaacatggaggacaggaatggtgggatggaccagggaagggag 628
Query: 241 acgatttataagcatctgcccttcctttcctccggacggcagagtgccacgcaaagcact 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acgaggcataagcatctgcccttcctttcctccggacggcagagtgccacgcaaagcact 568
Query: 301 gaatcagaatgtgcttggaaagctaaattctgcacagtgtaacgtcatgtagattcagaa 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 567 gaatcagaatgtgcttggaaagctaaattctgcacagtgtaacgtcgtgtagattcagaa 508
Query: 361 acagatgagatcccaattggtgatggcatcgttgaccaggacacaagttttgggatcctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acagatgagatcccaattggtgatggcatcgttgaccaggacacaagttttgggatcctt 448
Query: 421 ttgatgctcctagggaagaccttctgcccgaatgataattggaccaccagaatttcttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttgatgctcctagggaagaccttctgcccgaatgataattggaccaccagaatttcttct 388
Query: 481 taggccccactggtatagtgtgaatacctcagaagtaagaattaggctcctagatgagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taggccccactggtatagtgtgaatacctcagaagtaagaattaggctcctagatgagag 328
Query: 541 tcatctctgtggtaaaatgattagctgtttctagaagggaaatgcacttggtgagttgcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcatctctgtggtaaaatgattagctgtttctagaagggaaatgcacttggtgagttgcc 268
Query: 601 tgagaaggaagcagaggtgtctggactgactgcctagtcacctttctcatccctggccgg 660
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 267 tgagaaggaagccgaggtgtctggactgattgcctagtcacctttctcatccctggccgg 208
Query: 661 gtagttg 667
|||||||
Sbjct: 207 gtagttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_g18.g1 MSMg01no486_g18.g1 CHROMAT_FILE:
MSMg01no486_g18.g1 PHD_FILE: MSMg01no486_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:43 2005
(557 letters)
>mm_chr3_153048390_153049351
Length = 962
Score = 963 bits (498), Expect = 0.0
Identities = 545/562 (96%), Gaps = 5/562 (0%)
Strand = Plus / Plus
Query: 1 tcacagaacacactcacttaggaagccagaaaactgaatgtgactgtgagaacactgagg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tcacagaacacactcacttaggaagccagaaaactgattgtgactgtgagaacactgagg 260
Query: 61 catccaagtcttaaggagcagagcaggaaggcctgtctgggaggcagcagagctgctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catccaagtcttaaggagcagagcaggaaggcctgtctgggaggcagcagagctgctgcc 320
Query: 121 atggcgaggactggctctgcaagcaggctatgagtgaatatcctgggagggaggcctgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggcgaggactggctctgcaagcaggctatgagtgaatatcctgggagggaggcctgag 380
Query: 181 agctgggctgaagatgtcaccctccaaaggcaagctcctgccttccacaagggaggctgc 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgggctgaagatgtcaccttccaaaggcaagctcctgccttccacaagggaggctgc 440
Query: 241 tgctg-ctcatccagactgggtgccatgcagggtgtttcttctacaggggcgcatgaggg 299
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tgctggctcatccagactgggtgccacgcagggtgtttcttctacaggggcgcatgaggg 500
Query: 300 aaaagaaaggaagcaggaaggaatgtccgtgttctaaggcaccaccagagtaatggctac 359
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 501 aaaagaaaggaagcaggaaggaatatccgttttctaaggcaccaccagagtaatggctac 560
Query: 360 aggtataactcgcatggaggctcagaacagagggttcaggacccctgtatggacagttgc 419
||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 561 tggtataacttgcatggaggctcagaacagagggttcaagacccctgtatggccagttgc 620
Query: 420 aggggtagcgcggctgagcatccatccagcaaggctctccaggctgaggactgctcag-- 477
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 aggggtagcgcggctgagcgtccgtccagcaaggctctccaggctgaggactgctcagtg 680
Query: 478 cg--cggcctcagtctttctatcacgtcacccagatgggggataaaatgcccatcatttg 535
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cggccggcctcagtctttctatcacgtcacccagatgggggataaaatgcccatcatttg 740
Query: 536 gagaggtttggttctttaaaag 557
|| |||||||||||||||||||
Sbjct: 741 gaaaggtttggttctttaaaag 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 962
Length adjustment: 10
Effective length of query: 547
Effective length of database: 952
Effective search space: 520744
Effective search space used: 520744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
