Query= MSMg01no486_h11.b1 MSMg01no486_h11.b1 CHROMAT_FILE:
MSMg01no486_h11.b1 PHD_FILE: MSMg01no486_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:47 2005
(637 letters)
>mm_chr3_64806860_64807896
Length = 1037
Score = 1133 bits (586), Expect = 0.0
Identities = 616/626 (98%), Gaps = 3/626 (0%)
Strand = Plus / Minus
Query: 14 ctcttgcttgttctattcaggccctcaagtgattgaatgaagtgcctccacactacaaag 73
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 ctcttgtttgttctattcaggccctcaagtgattgaatgaagtgcctccacactacaaag 978
Query: 74 tgcagtctatttccagtccaccaattcaaatgtcagtctcattgaaaacacc-ttcttag 132
||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct: 977 tgcagcctatttccagtccaccaattcaaatatcagtctcattgaaaacaccttttttag 918
Query: 133 acaagtccaaggtagtgtttagtcacgtgtctgaatatcttaagatggtgtcaagttatc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 acaagtccaaggtagtgtttagtcacgtgtctgaatatcttaagatggtgtcaagttatc 858
Query: 193 atataaaattcagtaccacatgccaactccttgtctttttgggttatgtagattggagat 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 atataaaattcagtaccacatgccaactccttgtctttttgggttatgtagattggagat 798
Query: 253 actagaagagaacttgagacttttattcaaagatggggaaactgaggttgctatacaagt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 actagaagagaacttgagacttttattcaaagatggggaaactgaggttgctatacaagt 738
Query: 313 ctataatacttggcttagagtctcaaaaacatttgatagaactggaagtaaccccaagat 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctataatacttggcttagagtctcaaaaacatttgatagaactggaagtaaccccaagat 678
Query: 373 aaactatgctattttctattttactggccattgggctggtaatcattcagatttctaaga 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaactatgctattttctattttactggccattgggctggtaatcattcagatttctaaga 618
Query: 433 caattgattgcccatttctactctatttaacattttaaatgaattagttaaaactaacag 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 caattgattgcccatttctactctatttaacattttaaatgaattagttaaaactaacag 558
Query: 493 caacacagagtcacagtgacttcctactttcacccagtttccttctctgcattttctgac 552
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caacacagagtcacagtgatttcctactttcacccagtttccttctctgcattttctgac 498
Query: 553 tacatctcctgccactcatgctcacacctcataaatgctttggctaactcactga-gcaa 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 497 tacatctcctgccactcatgctcacacctcataaatgctttggctaactcactgaag-aa 439
Query: 612 cttgatgaacattcagttgcatcccg 637
|||||||| | |||||||||||||||
Sbjct: 438 cttgatgaccgttcagttgcatcccg 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_h11.g1 MSMg01no486_h11.g1 CHROMAT_FILE:
MSMg01no486_h11.g1 PHD_FILE: MSMg01no486_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:47 2005
(579 letters)
>mm_chr3_64635850_64636828
Length = 979
Score = 1104 bits (571), Expect = 0.0
Identities = 577/579 (99%)
Strand = Plus / Plus
Query: 1 tcttggatcagggactgaaatatcactttttcttttaagaaactgattctgataaacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttggatcagggactgaaatatcactttttcttttaagaaactgattctgataaacact 260
Query: 61 gatgcctaacaataaggaaataaatgttaaggaaaataagtgactgtgaaaagtaccggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgcctaacaataaggaaataaatgttaaggaaaataagtgactgtgaaaagtaccggg 320
Query: 121 actatttttcagatagatttgttagtggagacttcctaagccagagacatggaaagacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actatttttcagatagatttgttagtggagacttcctaagccagagacatggaaagacca 380
Query: 181 taactgacaagacagtagttatcctatttattaggaccattgaagttcagcttgaatagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taactgacaagacagtagttatcctatttattaggaccattgaagttcagcttgaatagc 440
Query: 241 aagaatatatttgttgatgtgattctgttgaagctcttcatgtggaaggaattatcttga 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaaatatttgttgatgtgattctgttgaagctcttcatgtggaaggaattatcttga 500
Query: 301 aatacatatgtaggctgacacaacaacagctttataaagcattcatgcataatttcctag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatacatatgtaggctgacacaacaacagctttataaagcattcatgcataatttcctag 560
Query: 361 ttcaacatattgctcatttatcacaattgagttcacagacaaggatgaaccataagctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaacatattgctcatttatcacaattgagttcacagacaaggatgaaccataagctga 620
Query: 421 atcaatgacacagaaaacatgatcatttggaaaattcattcatgttttcctctgtcaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcaatgacacagaaaacatgatcatttggaaaattcattcatgttttcctctgtcaact 680
Query: 481 actgcaaactgatgagcaaccataaattttgagtctaagcaatagaacagaaggaggcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgcaaactgatgagcaaccataaattttgagtctaagcaatagaacagaaggaggcag 740
Query: 541 actgtaacaagaacaatatattatgagcctaaaaatgcc 579
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 actgtaacaaaaacaatatattatgagcctaaaaatgcc 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
