BAC Information

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BAC

Clone NameMSMg01-486J10
Chromosome3 (Build37)
Map Location 94,826,974 - 94,827,261
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687
Downstream genePsmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486J10.T7 (MSMg01no486_j10.b1)MSMg01-486J10.TJ (MSMg01no486_j10.g1)
ACCAG565756AG565757
length850747
length of high quality
(start - end)		---291 (325 - 615)
definitionCHROMAT_FILE: MSMg01no486_j10.b1 PHD_FILE: MSMg01no486_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:56 2005CHROMAT_FILE: MSMg01no486_j10.g1 PHD_FILE: MSMg01no486_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCTTNNAATNNAAGTATATTGGTCTATGNNATTTTATGATGCGNNNN
GAATATTTGTTTTTTCTATCTAAAAGTGNTTATATATATATTCTCNNTNT
NNNTTTTTTTCCCCTCCGNNCCNCAAGAGAGGGGCTTCTTTNNNCCCCTC
CTTCCCCTCTNNNNNTTTTNNCCCCCCNCTTNNCCANNTNCCCCTCCCTC
TTACCCCTCCACCACTTCNTCTTCTTTTCCCTCTTTTCTTTAATTATCTC
CCTCTCCCATATTTTTTTATATCTTTTTCCCTTTCTCTCCCTTTTATCTC
CCTCATTTATATCCCATCACTATCCCTTTTCCCCTCCTATTTTCCCCTTC
CCCCCCCTCTTACCTATTTTTATTCTCTCCTCCTTCCTTTCTTTTTTCTC
TCCCCCCCTCTTTTGCTGTTTAACATTCCCCACCATTCTTCATTTTTCCT
CCTCCCCTATTTTCTTTCTTTTTATCCCTTCTCTTTTCCCTCCACCTTAT
TTCCCAATTCCTTTTCCCTTTTCCTTCTCTTTTCTCCACCTTTATTCTTC
TCTTTCTCTTTATTTTTTCTCTTTTCTTTTTTTTCTTTCCTCTCCTCCCT
TCTATTTCTTTCCTTCTTTCCCCCTCTTCTTACCACATTATACACCACCC
CTTTCTCCTTCCCTCTCTCTTCTTCCCCTACACCCCATCTCTTTTTTCCA
CCCCTTTTCCCTATTTCTTCATACTCCTTCCTTCCCCCTTTTTTCCCTCT
TTTTCTTTTATTTCTATCCTCCCTTCCTCTTTATTTTCTTTTCACTATCC
TATATTTTTCATATCAACCTCCATTCCCATCATTTTATTCCTCACCTATT


NTCGTTGCTGTGGGTAGGNNTGGNGGNCGCCTTTCGAAAACGGTTAGGNG
ACCTATAGAATGCTAAAAGAGAATTCCTGCTCCTCCTGCCTCTCTTCCCA
AGTGCTGGAATTACCTGCACGCTCTATTTATTCATTTATTTATTTATTTA
GGATCTCAGATAGACCAGGGTGGCCTCAGATTTGCTATGTAGATCATGCT
GCCTCCACTTCCTCAAGGCTGGAATTGCAGGCATGTGCCACAGCACCTGT
CTCTTACAGTAAGGCACAGAGTGACAGAGTAGGGCATTCGACACCCTCTT
CTGATGTGCACACTTTCTTCATACACTTGCACATCCACGATCACTTACGC
TGCACATAACACACACACACACATAATGACCAAAAAATTCCCCTAAAATA
GTTGGAAGGCAATGCACACAGGTTGAAAGAAGGCGTCTTTAACTACTACA
CTTTACAAAGGACTTTTATTCAGAATACATTGTTTAAAACTGCTGGTGTG
GAAGCACATCTGGTGAGGCAAAAACGTGAGGTATTCAAGGCTAATCTTTT
CTATATATGGGAACCTGTCTGAAAACGAAACCCAAACCAAACCACCCATA
ACTAGTAAGAAAACCACAATAAAATAATGGGGGAAATGACTTGAAAAACA
CTTTGGAAAAGAAATTTAAACGGCCTACATAAAAATCCAGGCTTAGTGGC
GCACGCCTTTAATCCAGCACTCATGAGGCAGAGGCAGGCACGATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_j10.g1 MSMg01no486_j10.g1 CHROMAT_FILE:
MSMg01no486_j10.g1 PHD_FILE: MSMg01no486_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:56 2005
         (291 letters)



>mm_chr3_94826774_94827462
          Length = 689

 Score =  542 bits (280), Expect = e-158
 Identities = 287/290 (98%), Gaps = 2/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgcacatccacgatcacttacgctgcacataacacacacacacacataatgaccaaa 60
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 488 acttgcacatccacgatcacttacgctgcacata--acacacacacacataatgaccaaa 431

                                                                       
Query: 61  aaattcccctaaaatagttggaaggcaatgcacacaggttgaaagaaggcgtctttaact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 430 aaattcccctaaaatagttggaaggcaatgcacacaggttgaaagaaggcatctttaact 371

                                                                       
Query: 121 actacactttacaaaggacttttattcagaatacattgtttaaaactgctggtgtggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 actacactttacaaaggacttttattcagaatacattgtttaaaactgctggtgtggaag 311

                                                                       
Query: 181 cacatctggtgaggcaaaaacgtgaggtattcaaggctaatcttttctatatatgggaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cacatctggtgaggcaaaaacgtgaggtattcaaggctaatcttttctatatatgggaac 251

                                                             
Query: 241 ctgtctgaaaacgaaacccaaaccaaaccacccataactagtaagaaaac 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctgtctgaaaacgaaacccaaaccaaaccacccataactagtaagaaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 689
Length adjustment: 9
Effective length of query: 282
Effective length of database: 680
Effective search space:   191760
Effective search space used:   191760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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