BAC Information

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BAC

Clone NameMSMg01-486K14
Chromosome3 (Build37)
Map Location 48,483,952 - 48,609,441
singlet/doubletdoublet
Overlap geneLOC100039404
Upstream geneLOC666202, LOC666208, 1700018B24Rik
Downstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486K14.T7 (MSMg01no486_k14.b1)MSMg01-486K14.TJ (MSMg01no486_k14.g1)
ACCAG565812AG565813
length720742
length of high quality
(start - end)		637 (80 - 716)623 (75 - 697)
definitionCHROMAT_FILE: MSMg01no486_k14.b1 PHD_FILE: MSMg01no486_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:01 2005CHROMAT_FILE: MSMg01no486_k14.g1 PHD_FILE: MSMg01no486_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,483,952 - 48,484,588)(48,608,819 - 48,609,441)
sequence
GGGGTTTGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGTTTAGTTTTGCCNTGGGAGACTGGTTCTGCTATGT
GAACACAAATACTGATGAGGTCATTATTGAGAGTTGCAGGTGCCATGAGG
GCACTACAGCAGATGGACACTACAGGAGAAAATGTGATGCTGTGCACCAA
GAGCTGCTCCCTGTGTCACAGTGACCACTCCTATTCTATTTTTTTAACCT
ATACGTTTAGGTATTATTTTTATTTGTCTTTCTTTTGTGATGTGTTTTCT
GATTTAGAATGTTCTAGAGGGTGAAAGGACTAACACACATGTGGCTGGGA
ACAAGTCTACAGTCACAGCTTTGCTTTAAAATTCTTGTCATCTTGTTATT
AGTTTCTGCTCATTGGAACTGTATCAGAGAAGTCAGAGCATCTTTTTTCT
TCTTTGGGTACCATCTTTTCCTGACTAATGTATATCCATAATATCATTAT
TGTTATGCTAAGCTTATAAGAAAAATACTATATAATTAAATGCTAACTTG
ATTCTACTAACTGGCTATTATTTATCTAATAATCTTTATATTTTTATTTA
ACTCAAAAGGTATCTATGTATACATACACATGCATGAAGTTATTTTCTAC
ACCACATACACAGAAACAACAAAATGGACTTGGTAGGTTATAGATATTAA
TACATGTATCTATACAAATG

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATAATTACGTGAAAACTTGTATTAA
TTTTTAATAAACACGATGAAATTTTTGAAAGAAAACAATTTTGTTTCTGG
TATGCGAGTAAATATAAGCATTATTTCCATGAGACTGGACATTATTCTTC
ATAAAATGACATCTAAAAATTATTTAAAATCCAGGGCTACTTTCAACAAC
TAAATTAATAGTAAACAAAATGTGCTCACAATAAATGTCATTAAGGTTCA
CTGATACTACCTGACACCCTCATATTTCTGAGAGCTTCCAATACAGGCCA
TTTGTCTTACCTATCAGGTTATTTAGCTACCTACAAAAAGATGATAACTA
CTTTCTCATTACAAAGCTGCCCCATGCATATTTATAATTATTTCTCAATA
TGTACTCAATCACAAAAATTTATTTAATCTATCAAGTGAAGAGAAGGGAT
AAATCCCGAATTTCAAATAGTTAAAGAATGTAATTTTTGTTCAAACTCTA
CATTCATATTTTAGCTGCAGTTTCTTGTTCATATATGTGTGTGTCCATGT
GTATGTGTATAGGATTTTATATTTATTTACAGTATAATACTCCCTAAATA
GAGACAATCTACTTCATCAAAGCAATAATTACTACTTACATATGAATGTT
TCATATCCACTCCTTGTGTGTGTGTGTGTATGTGTGTGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_k14.b1 MSMg01no486_k14.b1 CHROMAT_FILE:
MSMg01no486_k14.b1 PHD_FILE: MSMg01no486_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:01 2005
         (637 letters)



>mm_chr3_48483752_48484788
          Length = 1037

 Score = 1232 bits (637), Expect = 0.0
 Identities = 637/637 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagactggttctgctatgtgaacacaaatactgatgaggtcattattgagagttgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggagactggttctgctatgtgaacacaaatactgatgaggtcattattgagagttgcag 260

                                                                       
Query: 61  gtgccatgagggcactacagcagatggacactacaggagaaaatgtgatgctgtgcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgccatgagggcactacagcagatggacactacaggagaaaatgtgatgctgtgcacca 320

                                                                       
Query: 121 agagctgctccctgtgtcacagtgaccactcctattctatttttttaacctatacgttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagctgctccctgtgtcacagtgaccactcctattctatttttttaacctatacgttta 380

                                                                       
Query: 181 ggtattatttttatttgtctttcttttgtgatgtgttttctgatttagaatgttctagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtattatttttatttgtctttcttttgtgatgtgttttctgatttagaatgttctagag 440

                                                                       
Query: 241 ggtgaaaggactaacacacatgtggctgggaacaagtctacagtcacagctttgctttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgaaaggactaacacacatgtggctgggaacaagtctacagtcacagctttgctttaa 500

                                                                       
Query: 301 aattcttgtcatcttgttattagtttctgctcattggaactgtatcagagaagtcagagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattcttgtcatcttgttattagtttctgctcattggaactgtatcagagaagtcagagc 560

                                                                       
Query: 361 atcttttttcttctttgggtaccatcttttcctgactaatgtatatccataatatcatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcttttttcttctttgggtaccatcttttcctgactaatgtatatccataatatcatta 620

                                                                       
Query: 421 ttgttatgctaagcttataagaaaaatactatataattaaatgctaacttgattctacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgttatgctaagcttataagaaaaatactatataattaaatgctaacttgattctacta 680

                                                                       
Query: 481 actggctattatttatctaataatctttatatttttatttaactcaaaaggtatctatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actggctattatttatctaataatctttatatttttatttaactcaaaaggtatctatgt 740

                                                                       
Query: 541 atacatacacatgcatgaagttattttctacaccacatacacagaaacaacaaaatggac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atacatacacatgcatgaagttattttctacaccacatacacagaaacaacaaaatggac 800

                                                
Query: 601 ttggtaggttatagatattaatacatgtatctataca 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttggtaggttatagatattaatacatgtatctataca 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_k14.g1 MSMg01no486_k14.g1 CHROMAT_FILE:
MSMg01no486_k14.g1 PHD_FILE: MSMg01no486_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:02 2005
         (623 letters)



>mm_chr3_48608619_48609641
          Length = 1023

 Score = 1205 bits (623), Expect = 0.0
 Identities = 623/623 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataattacgtgaaaacttgtattaatttttaataaacacgatgaaatttttgaaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 tataattacgtgaaaacttgtattaatttttaataaacacgatgaaatttttgaaagaaa 764

                                                                       
Query: 61  acaattttgtttctggtatgcgagtaaatataagcattatttccatgagactggacatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 acaattttgtttctggtatgcgagtaaatataagcattatttccatgagactggacatta 704

                                                                       
Query: 121 ttcttcataaaatgacatctaaaaattatttaaaatccagggctactttcaacaactaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ttcttcataaaatgacatctaaaaattatttaaaatccagggctactttcaacaactaaa 644

                                                                       
Query: 181 ttaatagtaaacaaaatgtgctcacaataaatgtcattaaggttcactgatactacctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttaatagtaaacaaaatgtgctcacaataaatgtcattaaggttcactgatactacctga 584

                                                                       
Query: 241 caccctcatatttctgagagcttccaatacaggccatttgtcttacctatcaggttattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 caccctcatatttctgagagcttccaatacaggccatttgtcttacctatcaggttattt 524

                                                                       
Query: 301 agctacctacaaaaagatgataactactttctcattacaaagctgccccatgcatattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agctacctacaaaaagatgataactactttctcattacaaagctgccccatgcatattta 464

                                                                       
Query: 361 taattatttctcaatatgtactcaatcacaaaaatttatttaatctatcaagtgaagaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 taattatttctcaatatgtactcaatcacaaaaatttatttaatctatcaagtgaagaga 404

                                                                       
Query: 421 agggataaatcccgaatttcaaatagttaaagaatgtaatttttgttcaaactctacatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agggataaatcccgaatttcaaatagttaaagaatgtaatttttgttcaaactctacatt 344

                                                                       
Query: 481 catattttagctgcagtttcttgttcatatatgtgtgtgtccatgtgtatgtgtatagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 catattttagctgcagtttcttgttcatatatgtgtgtgtccatgtgtatgtgtatagga 284

                                                                       
Query: 541 ttttatatttatttacagtataatactccctaaatagagacaatctacttcatcaaagca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttttatatttatttacagtataatactccctaaatagagacaatctacttcatcaaagca 224

                                  
Query: 601 ataattactacttacatatgaat 623
           |||||||||||||||||||||||
Sbjct: 223 ataattactacttacatatgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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