Query= MSMg01no487_a20.b1 MSMg01no487_a20.b1 CHROMAT_FILE:
MSMg01no487_a20.b1 PHD_FILE: MSMg01no487_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:32 2005
(673 letters)
>mm_chr3_99007115_99008187
Length = 1073
Score = 1207 bits (624), Expect = 0.0
Identities = 660/672 (98%)
Strand = Plus / Minus
Query: 1 agcatccacgcccttgattttgtttggtttttgtttttcaagacagggtttctctgtgca 60
|||||||| || ||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 1047 agcatccatgctcttgattttgtttggcttttgttttccaagacagggtttctctgtgca 988
Query: 61 gtcttggctgtcctggaactagctttgtagaccaggctggccttgaactcagagatctag 120
||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 gtcctggttttcctggaactagctttgtagaccaggctggccttgaactcagagatctac 928
Query: 121 ctgcctccgcctcctgagtgctggaactaaaggtgtgcgccactactgcccagttcctcc 180
||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct: 927 ctgcctctgcctcctgagtgctggaattaaaggtgtgcgctaccactgcccagttcctcc 868
Query: 181 ttccccatgaaatactaggcttatcaataaatctatcaagtttcccctcctgtcctcact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ttccccatgaaatactaggcttatcaataaatctatcaagtttcccctcctgtcctcact 808
Query: 241 tccaccctatcccctccccacatacattcgaagtcctctctgactcttaaatccatgact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tccaccctatcccctccccacatacattcgaagtcctctctgactcttaaatccatgact 748
Query: 301 gtaaccacaatgcttttcacttagatggtaaagaaaggcacccagctcaaggcctggcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gtaaccacaatgcttttcacttagatggtaaagaaaggcacccagctcaaggcctggcct 688
Query: 361 tttcagatcttcagcgatgagaaagcgatcgcctgtacacttgtccaccaacggagagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tttcagatcttcagcgatgagaaagcgatcgcctgtacacttgtccaccaacggagagtc 628
Query: 421 ttaaagattctaactcctcttctattgactccgtttccaccttcattgttttcctcttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttaaagattctaactcctcttctattgactccgtttccaccttcattgttttcctcttgt 568
Query: 481 ttttctgcccctgccaattaatcaacaacaataacaaaaaaatacaaactctcttcaacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttttctgcccctgccaattaatcaacaacaataacaaaaaaatacaaactctcttcaacc 508
Query: 541 tagttttgtttgaatcaagtttaatcaagtaagcaaaacctggcaaggactgggctgatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tagttttgtttgaatcaagtttaatcaagtaagcaaaacctggcaaggactgggctgatt 448
Query: 601 cttgggcccaggccatattctaactgatgacccagattgtgagccctaagcatcccattt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttgggcccaggccatattctaactgatgacccagattgtgagccctaagcatcccattt 388
Query: 661 ctgggccctggg 672
||||||||||||
Sbjct: 387 ctgggccctggg 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_a20.g1 MSMg01no487_a20.g1 CHROMAT_FILE:
MSMg01no487_a20.g1 PHD_FILE: MSMg01no487_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:33 2005
(478 letters)
>mm_chr3_98961898_98962775
Length = 878
Score = 909 bits (470), Expect = 0.0
Identities = 477/480 (99%), Gaps = 2/480 (0%)
Strand = Plus / Plus
Query: 1 gccatcagaaggcatgtgcagtgcttctaggttttgtactctgtccatgttctccaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccatcagaaggcatgtgcagtgcttctaggttttgtactctgtccatgttctccaggag 260
Query: 61 gtccatggcctcatctcctcatcggggaggactctcctctctaagaatcttctgtgcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccatggcctcatctcctcatcggggaggactctcctctctaagaatcttctgtgcttc 320
Query: 121 tctgccttttgatttctctatgctgggaacaagaagcagttcttcaggattatgtctaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgccttttgatttctctatgctgggaacaagaagcagttcttcaggattatgtctaac 380
Query: 181 aaataaaatctcttctatggtcaagctagactcttaggattcttagagaccgtgcgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataaaatctcttctatggtcaagctagactcttaggattcttagagaccgtgcgtgtg 440
Query: 241 tgcgtgtgcacatgcatgtggggaggtacgtgggggtatgtatgccctgcactgataagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcgtgtgcacatgcatgtggggaggtacgtgggggtatgtatgccctgcactgataagg 500
Query: 301 actttggttgtctacctctgttgttctccatctttttattttttaagttttttttttttt 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 actttggttgtctacctctgttgttctacatctttttattttttaagttttttttttttt 560
Query: 361 ttt--acattttgaaattaaaatgatatcatgtccccttttccctttcctccttctaacc 418
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttacattttgaaattaaaatgatatcatgtccccttttccctttcctccttctaacc 620
Query: 419 cttcccttgtacccgccccccatgctctataaaattcatggcttgtttttctttgtgagt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcccttgtacccgccccccatgctctataaaattcatggcttgtttttctttgtgagt 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
