BAC Information

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BAC

Clone NameMSMg01-487D22
Chromosome3 (Build37)
Map Location 149,876,990 - 149,900,033
singlet/doubletdoublet
Overlap genenone
Upstream geneEG381483, LOC100040620, LOC100040633
Downstream geneLOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487D22.T7 (MSMg01no487_d22.b1)MSMg01-487D22.TJ (MSMg01no487_d22.g1)
ACCAG566255AG566256
length795789
length of high quality
(start - end)		624 (47 - 670)597 (76 - 672)
definitionCHROMAT_FILE: MSMg01no487_d22.b1 PHD_FILE: MSMg01no487_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:48 2005CHROMAT_FILE: MSMg01no487_d22.g1 PHD_FILE: MSMg01no487_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,899,566 - 149,900,033)(149,876,990 - 149,877,586)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCCGTGTTTGCTGTCCATCACACTTCGTGTGCTTGATTCCAAA
GACGCGCAGCTGGAATTATGCCAAGGTGAGCCCCAGATGTTCAAGAATGC
TCACTTTTCTTTCCAAAATTAAAAGAGAAACCCCCCATCCTGGCAACTAA
AACTTTAACAGTTGGCATGAAGCCTCTTGGAGAGCATTGAGTAAAACAGA
AATGCTCATGCAACACTGAGATTCTGTTCCATTATGCAGCCCCAATTCTC
AGTGGAAGCTTTACAAACATTAACTAACGCTCACACACATCCCTGGGAGG
CAGTTCATCATCAATGGCTTTGTCTTCTCCTGTGGAAACCAAGGCACAGG
GAATAGAAATTGATTAGTAAAGTTCATGTAAGAAGAACCAGTTCCAAAAA
CAATCAATGCTTTTTATTTTTTAAAGTTGCAAATTCAGGACACAATCATT
AAAGTCTTTGACAAATATGGAATAAAATACTACAACAGCCAAATCACTTA
ACATTATACCATTAGTAGTATTACTTTTAAAACTCATAATTTAATATATT
CAACTATTATCCTGAGGGTGCATTGCTTGTGTATGGGTGTGCATTTACAT
ATGTGTGCACGCATGTAGCATGTGTCCACACAAATACAATTCTTCTTTCT
TTGTAGAAAATATTTTCTGTAATCTGGAAATTTNCATTTTGTTGTGCAAT
CTTAGGAATTGCTGACATTTTAATAAATAAAGACTCGTATTTCTT

CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATAAGATAATCCTCCAATCTAAAG
CTCAATGGCTAGAAATACCCAGGATTCTGTTCACCATGTATGTGCTTGCT
CAGAAGGTAGATTCTGTTCATTCAAGCTCCTTGGAGTGGCACATTGCTAA
TTCTCATGCATTGTGAATTTTGCTCATTATTAAGCTACAACAAACATTTT
TGTGAATGAGATGTCCTAAGCATCTATAAGGAGCTTGTGACACATTTGTT
GCATTGTTTTTTAATAGTTCGAAGCATGATACATGTCATAACTGAAGTCA
AAAGGCAAGGGAGTCTTACCGCATCACTGACTGAGAGTAGGGAAGAACTT
GTTTTTTGTTTGTTGGTTTGCTTTGTTTTTTCATTTGGAGACCTATTTTC
CACTATGCTTTGGTGTATCCTACTTATAGATATTCGTCAATATAGTAAAA
TAAAGACATAAGGTAAGATTAAATGCCATTTGAATATGTCACAGATAGTA
AAATAATGAGCTTTGAAATGACATTTTCTACCGTGCTTCCATATGAGATG
TAATCAAACCTTCCTGTATTAAACTTTATATCATTTCAACCCCTATTTTG
TGCTGGACATTTATTTGGAAATTTGAAATTTTCATGTTACCAGTTGACAC
AGACAAATTCCACATTATATCCATGTAAGTTATTAAATACTAAATGATAA
AAGATACAAATGAATATTCAAATAATTTGAAATAAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_d22.b1 MSMg01no487_d22.b1 CHROMAT_FILE:
MSMg01no487_d22.b1 PHD_FILE: MSMg01no487_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:48 2005
         (624 letters)



>mm_chr3_149899010_149900033
          Length = 1024

 Score =  843 bits (436), Expect = 0.0
 Identities = 460/468 (98%)
 Strand = Plus / Minus

                                                                        
Query: 157  ctttaacagttggcatgaagcctcttggagagcattgagtaaaacagaaatgctcatgca 216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 ctttaacagttggcatgaagcctcttggagagcattgagtaaaacagaaatgctcatgca 965

                                                                        
Query: 217  acactgagattctgttccattatgcagccccaattctcagtggaagctttacaaacatta 276
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 964  acactgagattctgttccattatgcagccccaattctcagttgaagctttacaaacatta 905

                                                                        
Query: 277  actaacgctcacacacatccctgggaggcagttcatcatcaatggctttgtcttctcctg 336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  actaacgctcacacacatccctgggaggcagttcatcatcaatggctttgtcttctcctg 845

                                                                        
Query: 337  tggaaaccaaggcacagggaatagaaattgattagtaaagttcatgtaagaagaaccagt 396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  tggaaaccaaggcacagggaatagaaattgattagtaaagttcatgtaagaagaaccagt 785

                                                                        
Query: 397  tccaaaaacaatcaatgctttttattttttaaagttgcaaattcaggacacaatcattaa 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  tccaaaaacaatcaatgctttttattttttaaagttgcaaattcaggacacaatcattaa 725

                                                                        
Query: 457  agtctttgacaaatatggaataaaatactacaacagccaaatcacttaacattataccat 516
            |||||||||||||| || |||||| || |||||||||||| |||||||||||||||||||
Sbjct: 724  agtctttgacaaatctgaaataaactattacaacagccaagtcacttaacattataccat 665

                                                                        
Query: 517  tagtagtattacttttaaaactcataatttaatatattcaactattatcctgagggtgca 576
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664  tagtagtattccttttaaaactcataatttaatatattcaactattatcctgagggtgca 605

                                                            
Query: 577  ttgcttgtgtatgggtgtgcatttacatatgtgtgcacgcatgtagca 624
            ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 604  ttgcttgtgtatgggtgtgcatttacatatgtgtgcacgcatgcagca 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no487_d22.g1 MSMg01no487_d22.g1 CHROMAT_FILE:
MSMg01no487_d22.g1 PHD_FILE: MSMg01no487_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:48 2005
         (597 letters)



>mm_chr3_149876790_149877786
          Length = 997

 Score = 1131 bits (585), Expect = 0.0
 Identities = 594/597 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataagataatcctccaatctaaagctcaatggctagaaatacccaggattctgttcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataagataatcctccaatctaaagctcaatggctagaaatacccaggattctgttcacc 260

                                                                       
Query: 61  atgtatgtgcttgctcagaaggtagattctgttcattcaagctccttggagtggcacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtatgtgcttgctcagaaggtagattctgttcattcaagctccttggagtggcacatt 320

                                                                       
Query: 121 gctaattctcatgcattgtgaattttgctcattattaagctacaacaaacatttttgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctaattctcatgcattgtgaattttgctcattattaagctacaacaaacatttttgtga 380

                                                                       
Query: 181 atgagatgtcctaagcatctataaggagcttgtgacacatttgttgcattgttttttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagatgtcctaagcatctataaggagcttgtgacacatttgttgcattgttttttaat 440

                                                                       
Query: 241 agttcgaagcatgatacatgtcataactgaagtcaaaaggcaagggagtcttaccgcatc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttcgaatcatgatacatgtcataactgaagtcaaaaggcaagggagtcttaccgcatc 500

                                                                       
Query: 301 actgactgagagtagggaagaacttgttttttgtttgttggtttgctttgttttttcatt 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgattgagagtagggaagaacttgttttttgtttgttggtttgctttgttttttcatt 560

                                                                       
Query: 361 tggagacctattttccactatgctttggtgtatcctacttatagatattcgtcaatatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggagacctattttccactatgctttggtgtatcctacttatagatattcgtcaatatag 620

                                                                       
Query: 421 taaaataaagacataaggtaagattaaatgccatttgaatatgtcacagatagtaaaata 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaataaagacataaagtaagattaaatgccatttgaatatgtcacagatagtaaaata 680

                                                                       
Query: 481 atgagctttgaaatgacattttctaccgtgcttccatatgagatgtaatcaaaccttcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgagctttgaaatgacattttctaccgtgcttccatatgagatgtaatcaaaccttcct 740

                                                                    
Query: 541 gtattaaactttatatcatttcaacccctattttgtgctggacatttatttggaaat 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtattaaactttatatcatttcaacccctattttgtgctggacatttatttggaaat 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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