BAC Information

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BAC

Clone NameMSMg01-487G22
Chromosome3 (Build37)
Map Location 75,377,573 - 75,378,231
singlet/doubletsinglet
Overlap geneSerpini1
Upstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49, Pdcd10
Downstream geneGolph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487G22.T7 (MSMg01no487_g22.b1)MSMg01-487G22.TJ (MSMg01no487_g22.g1)
ACCAG566397AG566398
length769798
length of high quality
(start - end)
660 (47 - 706)620 (74 - 693)
definitionCHROMAT_FILE: MSMg01no487_g22.b1 PHD_FILE: MSMg01no487_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:02 2005CHROMAT_FILE: MSMg01no487_g22.g1 PHD_FILE: MSMg01no487_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTTTTTGTGCATTTTATTAAGGAGTTTTGCATTGATGTTCATA
AGCGAAATTATCTGAGATTATCTTTTTTCCTTGAGATTTTGTGTGGTTTA
GGTATCAGGATGATTGTGGCCTCATAGAATGAATTAGGTAGTGTTCCTTC
TATTTCTATTTTGTGGAATAATTTGAGGAGTATAAGTCTGGTAGAACTCT
GAGCTAAAACTGTCCATCTCTAAGCTTTTTTTGGTTGGGAGATTTTAATG
ATTTCTTTAGGGGTTATAAGGCTGTTTAAATAGTTTACTTTTTCTTGAGT
TAACTTTGGTAAATAGTACTTGTCTAGAAAATCATCCATTTAAGTAAGGT
TTTGCAATTTTGTGAAGTATTAGTTTTTGAAATAAGAATATTGGGTTTTT
TGTTAATATTTTTAATTTCCTCATTGTCTGTTCTTATGTCTCCCTTTTCA
TTTCTGATTTTGTTTATTTGGATGCTGTCTCTACATCTTTTAATTAGTTT
GGCTAAGGGTTTATCGATCTTGTTGATTTTCTTAAAGAAACAGCTCTTGG
TTTTATTGATTCTTTGTATTGGTTTAATTCTTTGTAATTGTAGTATATCA
GAGATATAAGCATCCAATTTAAATATCATAATTACAGATCATGATTTAGT
ACTAAGAAGGTAATAATAGTATCCTTTAGGAAATAGTGAACTTACAGTGA
AGAAATGGAATGATACTCA
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCACAGGGGAGTTTACCCTGTGGCACA
GTCACTAAGCTCCCAAATCCAGCCAGCTCCCTGGATGGAAAACTCACTAT
ATTCATCTGTTTGTGCCTTCAGCCTGGTTCAAAAGCAGTTTTGTTTAAGC
AATGTGCTTACATTTCTGTACATTGCTACTTTATATGTGTGTTCAGTGTT
CAGACAAATTGACAATGATTCAGTAATAGAAAGCAAGAGAGACAGGAATG
AAGAGCCCTATGGAATTAGGAAAACCAAATATTGATTGAAGTATTCTGAT
AGTAATCCCCAGAGAGGCATGAGGTTAGGGTGGTGCTCACTGAGTTAGCT
GAGTGAATGAAGGACCAGCCTGGAGACTTCAAATGATGATCAGCATGTGT
GACGAAGAGCACAAATTCTTGCATTTACATTGAGAGGGGATGGTAACACT
CTCCCTAAAGCTTCCATACAACTTGTTTTGAGTGTGTGTGTGTGTGTATT
AAGAAGCAAAATTATAGATATTGGTAAAGAGAGTGACTTATTTTCAGAGA
AAGGAAAGTAAAACTAAACCTTTGCTTCCTCCACACAGCTGCTTTGACTC
TTTTTTCCATCTATGGGAACGGTTCATGCAGAAATGCTTGAGATGGGCGG
AGGAATACATTATATGTTGTATAAGCTTTCTCTCTTTGCAGTTAAGCTCA
TAAAGCTGTATGAAAAGATGTTTTCCAGCCATGAAATAGTAAGAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_g22.g1 MSMg01no487_g22.g1 CHROMAT_FILE:
MSMg01no487_g22.g1 PHD_FILE: MSMg01no487_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:02 2005
         (620 letters)



>mm_chr3_75377413_75378431
          Length = 1019

 Score = 1064 bits (550), Expect = 0.0
 Identities = 613/660 (92%), Gaps = 41/660 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacaggggagtttaccctgtggcacagtcactaagctcccaaatccagccagctccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ccacaggggagtttaccctgtggcacagtcactaagctcccaaatccagccagctccctg 220

                                                                       
Query: 61  gatggaaaactcactatattcatctgtttgtgccttcagcctggttcaaaagcagttttg 120
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 221 gatggaaaactcactatattcatctgttcatgccttcagcctggttcaaaagcagttttg 280

                                                                       
Query: 121 tttaagcaatgtgcttacatttctgtacattgctactttatatgtgtgttcagtgttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tttaagcaatgtgcttacatttctgtacattgctactttatatgtgtgttcagtgttcag 340

                                                                       
Query: 181 acaaattgacaatgattcagtaatagaaagcaagagagacaggaatgaagagccctatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acaaattgacaatgattcagtaatagaaagcaagagagacaggaatgaagagccctatgg 400

                                                                       
Query: 241 aattaggaaaaccaaatattgattgaagtattctgatagtaatccccagagaggcatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aattaggaaaaccaaatattgattgaagtattctgatagtaatccccagagaggcatgag 460

                                                                       
Query: 301 gttagggtggtgctcactgagttagctgagtgaatgaaggaccagcctggagacttcaaa 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 461 gttagggtggtgctcactgagttagctgggtgaatgaaggaccagcctggagacttcaaa 520

                                                                       
Query: 361 tgatgatcagcatgtgtgacgaagagcacaaattcttgcatttacattgagaggggatgg 420
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 521 tgatgatcagcatgtgtgacaaagagcacaaattcttgcatttccattgagaggggatgg 580

                                                                       
Query: 421 taacactctccctaaagcttccatacaacttgttttgagtgtgtgtgt------------ 468
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 581 taacactctccctaaagcttccatacaacttgttttgagtgtgtgtgtatgtgtgtgtgt 640

                                                                       
Query: 469 ----------------------------gtgtgtattaagaagcaaaattatagatattg 500
                                       ||||||||||||||||||||||||||||||||
Sbjct: 641 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattaagaagcaaaattatagatattg 700

                                                                       
Query: 501 gtaaagagagtgacttattttcagagaaaggaaagtaaaactaaacctttgcttcctcca 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gtaaagagagtgacttattttcagagaaaggaaagtaaaactaaacctttgcttcctcca 760

                                                                       
Query: 561 cacagctgctttgactcttttttccatctatgggaacggttcatgcagaaatgcttgaga 620
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 761 cacagctgctttgactcttttt-ccatctatgggaaccgttcatgcagaaatgcttgaga 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1019
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1009
Effective search space:   615490
Effective search space used:   615490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)