BAC Information

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BAC

Clone NameMSMg01-487G23
Chromosome3 (Build37)
Map Location 108,167,089 - 108,167,525
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1
Downstream geneMybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487G23.T7 (MSMg01no487_g23.b1)MSMg01-487G23.TJ (MSMg01no487_g23.g1)
ACCAG566399AG566400
length1,351782
length of high quality
(start - end)		---438 (72 - 509)
definitionCHROMAT_FILE: MSMg01no487_g23.b1 PHD_FILE: MSMg01no487_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:03 2005CHROMAT_FILE: MSMg01no487_g23.g1 PHD_FILE: MSMg01no487_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCACAATCACTATAGTTGGCGGGCTGAGTATAAATCTAGTAAAAATTA
TTTCCATTCCCAAACGACGAGGAATGTCACTAGCTAGTACTATTTACTTC
TCTGGNTATAGTGNAATATCTACATGATGATGCCATACCATGCGCTACGT
GCTCTTCCTCATAGTTGTGCTATATGATTTAGAACCACTATTGACATCTA
GTNCATCACCCTTCACGCTATTAGCTCTCCGACATTCTGTTCTCTGCTTG
TCTATNACGNAACATCTCTTAATAGCAATCCATTGAGCTGCCAGCTCCGC
CCTCATCACTATCTTGTCTACACGCACCGCCTCCACGTACCACTCATAGT
CATTGTCTTACTCCTGCCTCGTCACATGTCAACGCACTATCTTATCTCAT
TATGGTTATTTCTCTATTCCTCCATACCGCGCACCACACTTCGTATCTGC
CAAATTGTTCGTACAGCCTGGAGCATTCACGCACAACAAATCTCATACAC
TACCACCTTTCTCTTAACTCATCGCCATCTTTCCGCAATACTGCTATATA
CTATACAACTTACCGCTCACGTCCCCTATGTCATAGCTCCCTATTTGAAG
TTACGGCGCAGAGAACACATATTCGATNATCGCACCGTTTCCGTATGACT
TACTGAACGCAACTATCTATTGTATGCTCTTATTACCACACTCACTCATA
ACCAAGCTCCCGTTCTTTCTTATGTTCGTCCATACCATCTGTAGCTCTAT
ATGTATCTCTCTCTCGACCATCTATATCTCTCACTCTCTCAAGTATATCC
TACTTCCATTTTTGCTCCCTCTCGACCCACTCTTCTCTGCAATCTTATTA
TAGCCGTCTCGTCTGCATATATTCGCCTCATTATTTTGTTATCCTAGCTC
GTCGTGGTGTATCACTCTACTAGGCATATCANCACGCCTTTTACTTCCCT
GCCTCTGACATAGTTGTCGAATGTGTTCCTTCTATGTGCCGCACGCGCAC
TCANCAGCCCATATGGCTGATCTTTTACGCTGTACATTCAACTTGCGCAC
CCGCAACACTCTTATTATAGCACGTTTGTTTTATTGATAGCCCAGACGAG
CGTATTATAGCTCTGCAATAATATCGATTTTCTTTCAAATTACTATCATC
TGCGCCACCCACTTACTGCACTTACACTGGCTCATTCTATTTGCTATTAA
CAGCTATACCGCTTNTATTCCTCCGCAAGCTCTAGTGCCCATTCTATACT
CCTATGCTTGTCTCATCTTCNTGNTACCTACAAACCATATTCTTCACTAA
CTTGTAGGTGTATCTCTAGATATCTCTCCTGCGCACCTCTTAGTATATGT
G

AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGGCACACCGTTAGCTCTTGCCACACT
TGTTGAACAGTAGGTCATTGAAGAGCTGGTCTCTATACCTTGGCCTTCAT
GGGGACCTCTGTTTGCTGTCCCAGCCCCAAGGGCAGGGGAGGGTTGGGGA
GAAGTGGGGACAGTCAGTCCCCTGTTGCCAGACTAGTTAGTGACACATGA
GCTCTGTCATCAGCTTGCTATGTGACTAGTGATACCCCATGATCTCTCGG
CCCCTCTGTGTGTGTGTGTACTGGAGTTTTTCTCCCCTCCACCCTGTGTG
TGCGTCTGTGTATGCGTGTCTATGTGTACTAGGACACCCCCCCCCCCGTG
TGTGTATATGGTGTGTGTGTATGTCTGTGTATGTGTGTATGTGTGTACTA
GGAGGACCCCGCCCCCATGTGTGTGTGTATGGGTGTGTGTGTATTTGTAT
GGTGTGNGTGNTNNTTTTTTNTTTTTTCCCCTTTTTTNTCTCTNTTTTTT
TTTTTCTCTNTTCTTTTTTCTTCTNTCTCTCTTCTCTCCTTTTTCTGCCT
CCTTCCCTCCTTCCCTTTTTCTCTTCTTCCTTTCTCTTCCCTTTTTCTCT
TTCTTTCCTTCCCCCCTCCCTCCCTTTTTTCCTTTTTTCCTCTTTCTTTT
CCCTTTTTCTTTTTTCCCCTCTTTTTCCTTCTTTCCTCCTTTTTCCCCCC
CTTTTTTTTTTTCCCCCTCTCCCTTTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_g23.g1 MSMg01no487_g23.g1 CHROMAT_FILE:
MSMg01no487_g23.g1 PHD_FILE: MSMg01no487_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:03 2005
         (438 letters)



>mm_chr3_108167002_108167839
          Length = 838

 Score =  810 bits (419), Expect = 0.0
 Identities = 432/439 (98%), Gaps = 6/439 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggcacaccgttagctcttgccacacttgttgaacagtaggtcattgaagagctggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcaggcacaccgttagctcttgccacacttgttgaacagtaggtcattgaagagctggtc 465

                                                                       
Query: 61  tctataccttggccttcatggggacctctgtttgctgtcccagccccaagggcaggggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tctataccttggccttcatggggacctctgtttgctgtcccagccccaagggcaggggag 405

                                                                       
Query: 121 ggttggggagaagtggggacagtcagtcccctgttgccagactagttagtgacacatgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggttggggagaagtggggacagtcagtcccctgttgccagactagttagtgacacatgag 345

                                                                       
Query: 181 ctctgtcatcagcttgctatgtgactagtgataccccatgatctctcggcccctctgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctctgtcatcagcttgctatgtgactagtgataccccatgatctctcggcccctctgtgt 285

                                                                       
Query: 241 gtgtgtgtactggagtttttctcccctccaccctgtgtgtgcgtctgtgtatgcgtgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gtgtgtgtactggagtttttctcccctccaccctgtgtgtgcgtctgtgtatgcgtgtct 225

                                                                       
Query: 301 atgtgtactaggacacccccccccccgtgtgtgtatatggtgtgtgtgtatgtctgtgta 360
           ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||
Sbjct: 224 atgtgtactaggacaccccccccc--gtgtgtgtatatggtatgtgtgtatgtctgtgta 167

                                                                       
Query: 361 tgtgtgtatgtgtgtactaggaggaccccgcccccatgtgtgtg----tgtatgggtgtg 416
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 166 tgtgtgtatgtgtgtactaggaggaccccgcccccatgtgtgtgagtgtgtatgggtgtg 107

                              
Query: 417 tgtgtatttgtatggtgtg 435
           |||||||||||||||||||
Sbjct: 106 tgtgtatttgtatggtgtg 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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