Query= MSMg01no488_d11.b1 MSMg01no488_d11.b1 CHROMAT_FILE:
MSMg01no488_d11.b1 PHD_FILE: MSMg01no488_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:04 2005
(670 letters)
>mm_chr3_152899273_152900342
Length = 1070
Score = 1222 bits (632), Expect = 0.0
Identities = 656/664 (98%), Gaps = 2/664 (0%)
Strand = Plus / Plus
Query: 8 gaattcatatttccttcccaagacctcaccatctgtttctattctgaacctgtgagcaac 67
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcatatttctttcccaagacctcaccatctgtttctattctgaacctgtgagcaac 267
Query: 68 actttgcaaaacatttccatgctctcatgggctgaggtccttcctctgtacctgggcaca 127
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 268 actttgcaaaacatttccaagctctcatgggctgaggtccttcctctgtacctgggcata 327
Query: 128 gctca-acgttctaaaagcagtgggggcaagcatggagatgggcgttgaagaacgtggga 186
||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 328 gctcaga-gttctaaaagcagtgggggcaagcatggaaatgggcgttgaagaacgtggga 386
Query: 187 tccttgccctcccagaagcctcctgtgtgttgaagaaccatcttgattgagaacacattt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tccttgccctcccagaagcctcctgtgtgttgaagaaccatcttgattgagaacacattt 446
Query: 247 gataacagccctaaacgtaatgcttctgtcctggaaggctaaaaattttaaatgtattta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gataacagccctaaacgtaatgcttctgtcctggaaggctaaaaattttaaatgtattta 506
Query: 307 gaaataaatttaccatattttgaagggacagctttcatgatcagaagccccacgaatggg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaaataaatttaccatattttgaagggacagctttcatgatcagaagccccacgaatggg 566
Query: 367 actctagagtatttatagaaaacacccgaagggcaggtttggctctcagactccattctt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 actctagagtatttatagaaaacacccgaagggcaggtttggctctcagactccattctt 626
Query: 427 gtctagtaagcacagggccccgtgtttatgatccagggcaaaaggaggaggagggacagc 486
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtctagtaagcacagggccctgtgtttatgatccagggcaaaaggaggaggagggacagc 686
Query: 487 agaagaggaggaactaaatggagaggagccggaattccactcctttccatgctcagccac 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agaagaggaggaactaaatggagaggagccggaattccactcctttccatgctcagccac 746
Query: 547 acagatgtgatcaaggaacagctgcgacttccttcctacctgtaccgggtccctgccatc 606
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 agagatgtgatcaaggaacagctgcgacttccttcctacctgtaccgggtccctgccatc 806
Query: 607 atgccttccccaccgagatggggggggggggtctgctcacaccctgagccacaggaaact 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 atgccttccccaccgagatggggggggggggtctgctcacaccctgagccacaggaaact 866
Query: 667 tctc 670
||||
Sbjct: 867 tctc 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_d11.g1 MSMg01no488_d11.g1 CHROMAT_FILE:
MSMg01no488_d11.g1 PHD_FILE: MSMg01no488_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:04 2005
(622 letters)
>mm_chr3_153062228_153063249
Length = 1022
Score = 1011 bits (523), Expect = 0.0
Identities = 595/623 (95%), Gaps = 10/623 (1%)
Strand = Plus / Minus
Query: 1 ttttctctgatactttagtggcagaggaaccttcagctcagcgtgaatgcccgtgcagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 ttttctctgatactttagtggcagaggaaccttcagctcagcgtgaatgcccgtgcagcg 908
Query: 61 ctgtcatttcgtctgtcactgtcttaagcgtgtgcccctccttggccgtgtcagatgttg 120
||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||
Sbjct: 907 ctgtcatttcgtctgtcactgtcttaagcttgtgcccctcctcgaccgtgtcagatgttg 848
Query: 121 ctcattagtgtgtaagggtttagtgtgtaagcgctttatcactgtaggcagagaactgat 180
||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||
Sbjct: 847 ctcattagtgtgtaagg-------gtg-cagcactttatcactgtaggtagagaactgat 796
Query: 181 gctcactctgtcccgcccctgagtgaagcatggacttgtgggtgtgtactcgctctgctg 240
||||||||||||| ||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 795 gctcactctgtcctgcccctgagtgaagcatggacttgtaggtgtgtgctcactctgctg 736
Query: 241 tgg-tgttccaatcaggtgtttatttccctaacaaagcgtaagctcactgcttcctctct 299
||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 735 tggct-ttccaatcaggtgtttatttccctaacaaagcgtaagctcattgcttcctctct 677
Query: 300 gtcctgcttttccctccagttacatcgctttgaagttcctttaccattgtttgaacacag 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 676 gtcctgcttttccctccagttacatcgctttgaagttcctttaccactgtttgaacacag 617
Query: 360 tgctcatcacagccttacctctgctggtgtgtaatttctctgttgcttgaattatccaca 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 616 tgctcatcacagccttacctctgctggtgtgtaatttctctgttgcttgaattagccaca 557
Query: 420 cgaggtggttatcttggatgcgtgcccgtgatttaagataatgaataacacttcattgtc 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cgaggtggttatcttggatgcatgcccgtgatttaagataatgaataacacttcattgtc 497
Query: 480 tgattcatccaaccagatgggtagcccatcattatgacaaaacattcaggcattgttttc 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 496 tgattcatccaaccagatgggtagcccatcattatgacaacacattcaggcattgttttc 437
Query: 540 cattcaccatgtctccccccatgcagaaggtaaaggaaggaagcacagtcagtgaacgtc 599
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct: 436 cattcaccatgtctccccccatgcagaaggtaaaggaaggaagcacaatcagtgaatgcc 377
Query: 600 atttttaaaggttgaaactctga 622
|||||||||||||||||||||||
Sbjct: 376 atttttaaaggttgaaactctga 354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
