Query= MSMg01no488_h03.b1 MSMg01no488_h03.b1 CHROMAT_FILE:
MSMg01no488_h03.b1 PHD_FILE: MSMg01no488_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:22 2005
(650 letters)
>mm_chr3_88052347_88053395
Length = 1049
Score = 1019 bits (527), Expect = 0.0
Identities = 608/643 (94%), Gaps = 15/643 (2%)
Strand = Plus / Plus
Query: 14 ggaacaaagcattcagcctggagcagcagggtcaggccgtccttgttatccctgctcaga 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ggaacaaagcattcagcctggagcagcagggtcaggccgtccttgttatccctgctcaga 273
Query: 74 gaaggagctagaataccctgttccatccagcaatctgctcacctttctggcctatctgct 133
||||||||||||| |||||| |||||||||| ||| |||||||| ||||||||||||||
Sbjct: 274 gaaggagctagaacaccctgctccatccagc-atccgctcacctacctggcctatctgct 332
Query: 134 cgcccaaggagtaggaaggagtcagttctccctgctgttgcagccctgtctcctcaacat 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 333 cgcccaaggagtaggaaggagtcagttctccctgctgttgcagccctgtctcctcaatat 392
Query: 194 acaagattctccttcctccttctgtgtccggtatgtccctcttctcaggtgtgtgtgcac 253
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 393 acaagattctccttcctccttctgcgtccggtatgtccctcttctcaggtgtgtgtgcac 452
Query: 254 aggtgtga------gtgtgtgtgtctgtgtgtgtgtgtgtgtactcttgtgtgtgtgctc 307
|||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct: 453 aggtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcttatgtgtgtgctc 512
Query: 308 tgcctcatacacagggcccctccgtgaacctggacctcaccaacatgaccagaggagaca 367
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgcctcatacgcagggcccctccgtgaacctggacctcaccaacatgaccagaggagaca 572
Query: 368 gccagcaagccccagtgtctgtccctctctgcccactgtgctgacatcatgaacgagcct 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gccagcaagccccagtgtctgtccctctctgcccactgtgctgacatcatgaacgagcct 632
Query: 428 tgctatgcctgacatctactcgtgtgccgaaaatctgaactcagatcctaatgctcaccc 487
|||||||||||||||||||| || ||| || ||||||| ||||||||||||| |||||||
Sbjct: 633 tgctatgcctgacatctacttgtttgctgagaatctgagctcagatcctaatactcaccc 692
Query: 488 agcaagcacttcacctactgagccatgtccctcaccccggggaagcccttcttgatgtct 547
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 693 agcaagcacttcacctactgagccatgtccctcaccccagggaagcccttcttgacgtct 752
Query: 548 aactttcatctctcatctttcaaagtccatgcatcccgattttaaggttcaaaataaaaa 607
|||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 753 aactttcatctctcatctttcaaa--------atcccgattttaagattcaaaataaaaa 804
Query: 608 tcatttaggaaacggctttgaattgttaacaggaactgaggaa 650
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcatttaggaaacggctttgaattgttaacaggaactgaggaa 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1049
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1039
Effective search space: 664960
Effective search space used: 664960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_h03.g1 MSMg01no488_h03.g1 CHROMAT_FILE:
MSMg01no488_h03.g1 PHD_FILE: MSMg01no488_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:22 2005
(657 letters)
>mm_chr3_88211281_88212333
Length = 1053
Score = 1125 bits (582), Expect = 0.0
Identities = 615/628 (97%), Gaps = 5/628 (0%)
Strand = Plus / Minus
Query: 30 tctcctcttactctgtcttcactgtttctgcctttgtcaggctgcgtcatcttagtctta 89
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 1053 tctcctcttactctgtcttcacggtttctgccttcgtcaggctgcgtcatcttagtctta 994
Query: 90 cctcccaagtccgtccttttgagtcagcctgtgcaggtcttagtctctgcttcaatccct 149
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 993 cctcccaagtccgtccttttgagtcaacctgtgcaggtcttagtctctgcttcaatccct 934
Query: 150 ttggcccttctatagttcagattcttgggttctcccttctctgaatggtggagtgtacat 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 ttggcccttctatagttcagattcttgggttctcccttctctgaatggtggagtgtacat 874
Query: 210 tctagctggcttcatcacatcccagctgagcggccttggacaagcttctgtctaccagtt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tctagctggcttcatcacatcccagctgagcggccttggacaagcttctgtctaccagtt 814
Query: 270 cttggtcatctgagtattggggatgatggtaatggatggtcatcacaaggatcctgtgag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 cttggtcatctgagtattggggatgatggtaatggatggtcatcacaaggatcctgtgag 754
Query: 330 gacttggtaagctaactcacctagaatgcttaggacagggccaggtaccagtcagtcttc 389
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gacttgataagctaactcacctagaatgcttaggacagggccaggtaccagtcagtcttc 694
Query: 390 caaccgttcccatgacaactgcatctttgcccatgtacacaatacatagcccttgagtgt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 caaccgttcccatgacaactgcatctttgcccatgtacacaatacatagcccttga---- 638
Query: 450 gcagccacctccttgatattccaagcttatttccctgaagtctggtctatatctccctat 509
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gcagccacctccttaatattccaagcttatttccctgaagtctggtctatatctccctat 578
Query: 510 gtgtgcatggaggtcggaggataactttcacaaccatttctctgtcatttctttctacct 569
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtgtgtatggaggtcggaggataactttcacaaccatttctctgtcatttctttctacct 518
Query: 570 tgtgaatcacaagggtcaaactcaggtcaccaggcttggcagaaattacctttacccatt 629
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 517 tgtgaatcacaggggtcaaactcaggtcaccgggcttggcagaaattacctttacccatt 458
Query: 630 cagccctttagaaacatgatcactccct 657
||| ||||||||||||||||||||||||
Sbjct: 457 cag-cctttagaaacatgatcactccct 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1053
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1043
Effective search space: 674821
Effective search space used: 674821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
