XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCC
CTTCCGTTCATAGCAAATCCTGACACTATTACTAAGGACAGGGAATGGCT
GACCTCTGAAAAGTTTTACCAGAAACTGACTGAGACAAATGCATATACTT
ACAACCACTGGAAGTCAGAGACTTCCACTAAATGTGGAACAATTAGAGGA
AGGAATGAAGGAGCTGAAGGGGATTGCAACCCTATAGAACAACAGTGTCA
ACTAGTCTGGGCCATTGGAGCTCCCAGAGAATAAGCCTAAAACCAAGGAG
CATAAATGGACCAGTTTGTGGCTCCAGGTACATATGCAGCAGAGGACTCC
CAATATAGTATGGCCTCAGTGGAAGAGGATCTGGTTAATCCTGTGGAAAC
TTGATATTCCAAGGAAGAGAGATGCTAGTGGCAGTGAGGTGGGAGTGGAT
GGTAAGATGGGGGAGCACCCTCTCAGAGGTGTGTGGGAGGGTGGGGTAAA
CTCTGGGAGGAGGGACCAGGAAGATGGCAACATAATAAAAATAATTTAAT
AAATAAAAGAAAAAATAAAAATAGCCTGTTTAAAAGGTGCATATTAGTTA
TACAAGTTCTCTGAAAACAAATAGGATATTTGGTATATTTTCATCAATAA
CTAAGATAAAGACACATGTATTGTGAAGTATCTTGAGAACATTCTATAAA
TACAAGGAAAAAAATTCTTGGATA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGGGTGTACAGATGATGTAGAGGGGC
TCATCGCTGGAAAATACACACACACACACACACACACACACACACACACA
TGCATCTGTTAACATTTCCTCTCTATCCGGTTACCCAGAACCCAGAAAAG
GATGTTAAATTCCCTGAAACTGGAGTTATAGATAGTTGTGAGACACCATG
TGGGCTATGGGGATTAAAGCTGGGTCCACTCTAACAGCAATCAATGCTCT
TAAGCACTAAGCCATATATCCAGCCCCTGGGAAGAGTTTTCAATGTCTGT
GCTGTGAAAGACCAGTTAGACAAAAGAAAATGCTTATTGTGGGGAACAAA
ATAAGGGGGGCGGGGGGGAGGGCGGGGAGAAGTAGGAGAGGAAAAGGGGC
CTAACATCTGGCCAGAGCTCCTGTGCTCTGGGCAGACAGACTAGGCAGAG
CTTCAAGACACTTTTCCACACACCCCGTGAGCATGCCTGACACACGCAGT
GAGGGGTGGAAAAAGGGCAACCCCCAACCAGGAACCCTGGAGCTACCATG
CTCATGTAGGAGAGAGGGATGAAGGAAGGAGTTCTCAACACTGGTGAGAG
TGGTGCAGCAGATCTAGAAGCAGCAGAGACACTCTATGGTTTAAGACCTT
TCTTATAGAAATGCAGGGTGGAAAGAGATAATATATGACAGAGAG

Query= MSMg01no488_k16.b1 MSMg01no488_k16.b1 CHROMAT_FILE:
MSMg01no488_k16.b1 PHD_FILE: MSMg01no488_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:39 2005
         (636 letters)



>mm_chr3_6580856_6581891
          Length = 1036

 Score = 1106 bits (572), Expect = 0.0
 Identities = 621/644 (96%), Gaps = 16/644 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcctgacactattactaaggacagggaatggctgacctctgaaaagttttaccagaaa 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcctgacactattactgaggacagggaatggctgacctctgaaaagttttaccagaaa 260

                                                                       
Query: 61  ctgactgagacaaatgcatatacttacaaccactggaagtcagagacttccactaaatgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||  |||     |||
Sbjct: 261 ctgactgagacaaatgcatatacttacaaccactggaagtcagagac--cca-----tgt 313

                                                                       
Query: 121 ggaacaattagaggaaggaatgaaggagctgaaggggattgcaaccctatagaacaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggaacaattagaggaaggaatgaaggagctgaaggggattgcaaccctatagaacaacag 373

                                                                       
Query: 181 tgtcaactagtctgggccattggagctcccagagaataagcctaaaaccaaggagcataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgtcaactagtctgggccattggagctcccagagaataagcctaaaaccaaggagcataa 433

                                                                       
Query: 241 atggaccagtttgtggctccaggtacatatgcagcagaggactcccaatatagtatggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atggaccagtttgtggctccaggtacatatgcagcagaggactcccaatatagtatggcc 493

                                                                       
Query: 301 tcagtggaagaggatctggttaatcctgtggaaacttgatattccaaggaagagagatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tcagtggaagaggatctggttaatcctgtggaaacttgatattccaaggaagagagatgc 553

                                                                       
Query: 361 tagtggcagtgaggtgggagtggatggtaagatgggggagcaccctctcagaggtgtgtg 420
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct: 554 tagtggcagtgaggtgggagtggatggtaagatgggggagcacactctcagaggtggggg 613

                                                                       
Query: 421 gg----aggg---tggggtaaactctgggaggagggaccaggaagatggcaacat-aata 472
           ||    ||||   |||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 614 ggggggaggggaatgggataaactctgggaggagggaccaggaagatggcaac-tgaata 672

                                                                       
Query: 473 aaaataatttaataaataaaagaaaaaataaaaatagcctgtttaaaaggtgcatattag 532
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 673 aaaataatttaataaataaaagaaaaaatataaatagcctgtttaaaaagtgcatattag 732

                                                                       
Query: 533 ttatacaagttctctgaaaacaaataggatatttggtatattttcatcaataactaagat 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ttatacaagttctctgaaaacaaataggatatttggtatattttcatcaataactaagat 792

                                                       
Query: 593 aaagacacatgtattgtgaagtatcttgagaacattctataaat 636
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aaagacacatgtattgtgaagtatcttgagaacattctataaat 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)